Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1858 ATGAAGTACCTAGCTCAGGTTTACATTAATCTTAAATGGGTATTAGATTTCCTTCTATATTATTATCCCTTCTACAGCCTCCGCAGTTCTCATCTTCAAATGATTGGAGAAGATCTGAGCATATGCCGCTACCAGTCCACCCCTGGCTCAGAGGAACATGTAGACTGTGCAGTGTGTCTTTGCGAAATTAGAGAAGGAGAGGATATTAGAGTGCTGAGGTGTGACCATGTCTTCCACAGAGAGTGTTTGGATCGATGGATTGGTTTCAGGAATGCTACTTGCCCTCTTTGCAGACAATCAGTGGGTCCAAGAAGGAACATCACTGAACTCGGAGCTGAAGTTCTATTCTTTGAGTTTTGTTCAGTCCGCAATGACGGCCGTGACACTTGGTGGCTACGTTGA 402 0.4478 MKYLAQVYINLKWVLDFLLYYYPFYSLRSSHLQMIGEDLSICRYQSTPGSEEHVDCAVCLCEIREGEDIRVLRCDHVFHRECLDRWIGFRNATCPLCRQSVGPRRNITELGAEVLFFEFCSVRNDGRDTWWLR* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1858 133 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 126 - -
Dod02g1858 133 Pfam Ring finger domain 55 98 IPR001841 -
Dod02g1858 133 SMART ring_2 56 97 IPR001841 -
Dod02g1858 133 SMART ringv_2 55 98 IPR011016 GO:0008270
Dod02g1858 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 105 IPR013083 -
Dod02g1858 133 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Dod02g1858 133 SUPERFAMILY RING/U-box 55 109 - -
Dod02g1858 133 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 2 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1858 Dod-Chr2 25464274 25464848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1858 22 102 C3H Transcription Factor Family AT1G72220 38.554 1.60e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1858 K16282 - vvi:104878965 137.502