Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1857 ATGAAGTACTTAACACTGATTTACATTAATCTGAAATGGGTATTAGATTTCCTTCTATATTATCCCTTCTACAGCCTCCGCGGTTCTCATCTTCAAATGATTGGAGAAGATATGAGCATATGCCACTACCAGTCCACCCCTGGCTCAGAGGAACACGTAGATTGTGCAGTGTGTCTCTGCGAAATTAGAGAAGGAGAGGAGATTAGAGTGCTGAGGTGTGACCATGTCTTCCACAGAGAGTGTTTGGATCGATGGGTTGGCTTCAAGAATGCCACTTGCCCTCTTTGCAGACAATCAGTGGGTCCAACAAGGAACATCACTGAGCTTGGAGCTGAAGTTCTATTCTTTGAGTTTTGTTCAATCCGCAGTGATGAGCGGGACACTTGGTGGTTACGTTGA 399 0.4486 MKYLTLIYINLKWVLDFLLYYPFYSLRGSHLQMIGEDMSICHYQSTPGSEEHVDCAVCLCEIREGEEIRVLRCDHVFHRECLDRWVGFKNATCPLCRQSVGPTRNITELGAEVLFFEFCSIRSDERDTWWLR* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1857 132 ProSiteProfiles Zinc finger RING-type profile. 55 97 IPR001841 -
Dod02g1857 132 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 125 - -
Dod02g1857 132 SMART ringv_2 54 97 IPR011016 GO:0008270
Dod02g1857 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 104 IPR013083 -
Dod02g1857 132 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 3 125 - -
Dod02g1857 132 SMART ring_2 55 96 IPR001841 -
Dod02g1857 132 Pfam Ring finger domain 54 97 IPR001841 -
Dod02g1857 132 SUPERFAMILY RING/U-box 54 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1857 Dod-Chr2 25434201 25434599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1857 54 100 C3H Transcription Factor Family AT1G15100 55.319 3.42e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1857 K16282 - vvi:104878972 141.354