Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1856 ATGTCTACCCAAACCTTCAGCATGATCATCAAGTACCTAACTCAGGTTTACATTAATCTTAAATGGGTATTAGATTTCCTTCTATATTATTATCCCTTCTACAGCCTCCGCGGTTCTCATCTTCAAATGATTGGAGAAGATCTGAGCATATGCCGCTACCAGTCCACCCCTGGCTCAGAGGAACATGTAGATTGTGCAGTGTGTCTTTGCGAAATCAGAGAAGGAGAGGAGATTAGAGTGCTGAGGTGTGACCATGTCTTCCACAGAGAGTGTTTGGATCGATGGATTGGTTTCAGGAATGCCACTTGCCCTCTTTGCAGACAAGCAGTGGGTCCAAGAAGGAACATCACTCACCTTGGAGATGAAGTTCTAATCTTTGAGTTTTGTTCAGTCCGCAATGACGACCGTGACACATGGTGGCTACGTTGA 429 0.4499 MSTQTFSMIIKYLTQVYINLKWVLDFLLYYYPFYSLRGSHLQMIGEDLSICRYQSTPGSEEHVDCAVCLCEIREGEEIRVLRCDHVFHRECLDRWIGFRNATCPLCRQAVGPRRNITHLGDEVLIFEFCSVRNDDRDTWWLR* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1856 142 Pfam Ring finger domain 64 107 IPR001841 -
Dod02g1856 142 SMART ring_2 65 106 IPR001841 -
Dod02g1856 142 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 135 - -
Dod02g1856 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 114 IPR013083 -
Dod02g1856 142 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 7 135 - -
Dod02g1856 142 SMART ringv_2 64 107 IPR011016 GO:0008270
Dod02g1856 142 SUPERFAMILY RING/U-box 64 117 - -
Dod02g1856 142 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1856 Dod-Chr2 25371921 25372630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1856 64 110 C3H Transcription Factor Family AT1G15100 57.447 5.10e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1856 K16282 - vvi:104878969 142.51