Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1817 ATGGAAAGATCTATCACGAAAAGAGAAACGGGAAGATCTCCTCGCTGTGATAAAATTGGATTGAAGAAAGGTCCTTGGACACCGGAAGAAGATCAGAAGCTTCTTGACTACATTGCAAAAAATGGTCCTGGGAGCTGGAAGGCTCTTCCAAAACGTGCTGGTCTTAACAGGTGTGGCAAAAGCATCAGATTAAGATGGACCAACTACTTGAGGCCTGGCATTAAAAGAGGGAAGTTTTCCCAAGAAGAAGAACAAACAATTCTGAATCTCCACGCAATCATTGGAAACAAATGGTCCGCAATTGCTAGCCACCTACCAGGTCGGACAGATAACGGTGTCAAGAATATTTGGAACACTCGTCTGAAGAAGAAGCTGATTCGAACGGGCTATGATCCAATGACACACCAGCCTCGACAACAACTGCAGCCTCAAGAAGCTTTAACTAACACGAGCAGCGTGAACAGTAATACCTTCACAAACGTGGACAACAGCAATCACATCATTGATAATCTTCCAATGGTGGAGCAGTTTCCAAACACCATGTCGTGTTTTGAAACTGGAGGTCTCCAATTGGTCTATGATGATGGCTCTTTCTCTCATCACATGCCTTGTGAATTGAAAACATGTGCACAACACTTTTCCTATGACACTGTCCAAGACACGGAGACCATAGCGTTGAGTCATGGAGAAAGTTCTGCCAGTTACCCGCGGCTTCTTTCATGCTCAAGCACTACTGCATCTCCTTCCCATGTGGCTCCACCTGTGACCGAGACTTCATTGACTAATATGACCGATAATTGCAATGCTTCTGGTCTATATATGGCCCCTGGTCTCCTTATAGAGGATCCATTGTTCAATGTAATATAA 867 0.4441 MERSITKRETGRSPRCDKIGLKKGPWTPEEDQKLLDYIAKNGPGSWKALPKRAGLNRCGKSIRLRWTNYLRPGIKRGKFSQEEEQTILNLHAIIGNKWSAIASHLPGRTDNGVKNIWNTRLKKKLIRTGYDPMTHQPRQQLQPQEALTNTSSVNSNTFTNVDNSNHIIDNLPMVEQFPNTMSCFETGGLQLVYDDGSFSHHMPCELKTCAQHFSYDTVQDTETIALSHGESSASYPRLLSCSSTTASPSHVAPPVTETSLTNMTDNCNASGLYMAPGLLIEDPLFNVI* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1817 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Dod02g1817 288 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 11 243 - -
Dod02g1817 288 Gene3D - 78 151 - -
Dod02g1817 288 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Dod02g1817 288 Gene3D - 20 76 - -
Dod02g1817 288 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Dod02g1817 288 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Dod02g1817 288 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Dod02g1817 288 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Dod02g1817 288 MobiDBLite consensus disorder prediction 1 27 - -
Dod02g1817 288 CDD SANT 78 121 IPR001005 -
Dod02g1817 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Dod02g1817 288 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 243 - -
Dod02g1817 288 CDD SANT 25 70 IPR001005 -
Dod02g1817 288 SMART sant 75 123 IPR001005 -
Dod02g1817 288 SMART sant 22 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1817 Dod-Chr2 24131179 24134023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1817 11 141 MYB Transcription Factor Family AT1G34670 78.626 2.54e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g1817 Myb_DNA-binding 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1817 K09422 - gmx:100785374 276.559