Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1793 ATGAGGGCAGGGAAAGGGAACCAGGAAGAGGAAGAGTACGAGGAGGAAGATTTCGGTTCTTCCAAGAAACAAGGCGCTTCCTCTTTGCCTAACACCAATAACACCAACAAAGATGCAAAAGCTATTGATAAGGCTAGTGTGATAAGATCGAAACATTCAGTGACCGAGCAGCGAAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACGGCATCATTCTTATTAGAGGTGATTGAGTATGTTCAGTTCTTACAGGAGAAGGTACAAAGGTATGAGGGCTCATACCAAGGTTGGAGTCATGAGCCATCCAAGCTGATGCCATGGAGAAATAGCCATTGGCGTGTCCAAAGCTTTGTTGGTCAACCTCAAGTTGTAAAGAACGGTTCAGGTCCAGTGTCACCTTTTCCAGGAAAGTTGGATGAAAGCAACATCAGTATCTCTCCAAGTATGCTTAGTGGCACCCAGAATACGATAGATCCCGATCCGAGCAGAGATATTGTCAGCAAATCGGCAGAAGGGCAACCAGATTTAGCCAGCAAGGGAATACCTCTACCCTTGGCTATGCATGCAAACATGTCTGTACCTGTCAGAAGTGATGGTGTACTTGCCCATCCTCTCCAGGGAACTGTTTCTGAAGCACAATCAACGGAATGCCCAGCCACTAGTGAACCACGAAACCAACAAGACGAGCTGACTATTGAAGGAGGGACAATCAGCATATCAAGTGTATACTCCCAAGGGTTGCTGAACAATCTGACTCAAGCACTAGAGAGTGCTGGTTTAGATCTATCACAGGCTAGCATCTCAGTTCAGATTAATCTTGGAAAACGAGCAAACAAAGGACCAACCTGTGGGACCTCTTCTCCCAAGAATCATGATAACCTCCCTTCTAGCAATCAAGCTATCGCACATTTTAGAGATGCAGTCAGTGAAGACTCAGATCAAGCTCAGAAACGACTGAAAACGTTTAAGTGA 1014 0.4527 MRAGKGNQEEEEYEEEDFGSSKKQGASSLPNTNNTNKDAKAIDKASVIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQFLQEKVQRYEGSYQGWSHEPSKLMPWRNSHWRVQSFVGQPQVVKNGSGPVSPFPGKLDESNISISPSMLSGTQNTIDPDPSRDIVSKSAEGQPDLASKGIPLPLAMHANMSVPVRSDGVLAHPLQGTVSEAQSTECPATSEPRNQQDELTIEGGTISISSVYSQGLLNNLTQALESAGLDLSQASISVQINLGKRANKGPTCGTSSPKNHDNLPSSNQAIAHFRDAVSEDSDQAQKRLKTFK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1793 337 Pfam Helix-loop-helix DNA-binding domain 49 98 IPR011598 GO:0046983
Dod02g1793 337 CDD bHLH_AtBIM_like 46 122 - -
Dod02g1793 337 Gene3D - 38 118 IPR036638 GO:0046983
Dod02g1793 337 MobiDBLite consensus disorder prediction 22 40 - -
Dod02g1793 337 MobiDBLite consensus disorder prediction 42 60 - -
Dod02g1793 337 PANTHER TRANSCRIPTION FACTOR BIM2 1 335 - -
Dod02g1793 337 MobiDBLite consensus disorder prediction 289 312 - -
Dod02g1793 337 MobiDBLite consensus disorder prediction 1 60 - -
Dod02g1793 337 MobiDBLite consensus disorder prediction 159 193 - -
Dod02g1793 337 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 335 IPR044295 GO:0003700|GO:0006351|GO:0046983
Dod02g1793 337 SMART finulus 53 103 IPR011598 GO:0046983
Dod02g1793 337 MobiDBLite consensus disorder prediction 159 176 - -
Dod02g1793 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 119 IPR036638 GO:0046983
Dod02g1793 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1793 Dod-Chr2 23397405 23413207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1793 1 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 58.882 4.23e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g1793 HLH 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1793 - - gmx:100816055 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1793 02 23397405 23413207 Dod02g1793 02 23397405 23413207 ECH