Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1778 ATGGAGCCTTGGAGTTATGTTCCAGAAGAGAAGGGCTACTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAGGTAGAAAAGCGTTGGTTGAATGGGACAACAAAGCCTCCTGCAACCTTGAGAGAGATGGATTTAATTCAGAAAGAGAGGCAGTTAAGAGCATGGAATTTGTTGATTTGGGATTTCCCGATTTGTTCCGAAAGCCCTTTAATGGTAGCCAGCTTATGGGGACATCTAGCTGTGAGCTAGATAGTAATTCTAGTAGAAGAGGGAATTCCTCCACCCATGTTATTGCATTGGATTCCTCTTTTGGAGAAGAAGAATCCGAGTCGAAGCATTTAACTGCTCTAATTGAATCGAAAACTCACGATTCTTCCCTCATCGATTTGAAGTTAGGGAGATTAGCAGATTTTCAAGGTGCAAGCAGTGATACAGTTGCAAAAGAAGGGTTCACTTTAACACCTATGCATCCTACCTTGCTTGCGAAGAGAGCTCGCTCTTCCAGCTCGCCAAGTCAGACTCCTTTATGTCAAGTTTATGGTTGCAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAGGTTTGTGATGTTCACTCCAAGACGGCTAAAGTGATTGTTAATGGCATTGAACAGAGGTTTTGCCAGCAATGCAGCAGGTTCCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCAGGACACAATGAACGCCGAAGGAAACCTCAGTTTGACTACCTGTCTGGTGGTAAACAACATAAGATACTTCCGTCATATCATGGTGCAGAATATCTGGGGTCTTCATCACACACGAGACCCCAGTTTTCCTTTCAAGACATTTTTCAAAGTGGCATCCTTTTCCCAGCAAAGTATGACCAAATTTCTCAGAGAGGACTTGTCAAATTAGAAGAGGAATCAATTTTCAGTCCTCAACTAGCAGCAGCACCTATCACACATGGTCAGGAGTTATCTAGCTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCGTCACGCCACTCAGCAGGAAACCTGTTCAGTAGTTCCCATGTTTTGCAAGGCATCTGCATGCGCAGCGGAGACGACCATGTTTCTGAAACATCATTGGGGATAAGCAATGTGGATAGATATGTACCAGATGATTCCTTTCCATGTGGGATAAATTCCAAGGAAGTTATCAAGGATGAATCTGCAATGCTTTCTGAAGCCGGTCATCCTCATCAAGTCCGCAGCGATGATGTTTGCCAACCACTGGACGTATTCAATGTCAAACATCGTCTTTCCTCCGAACCTGGAGCCACTGTCGATCTGTTCCAATTGTCTTCACATCTTCAAAGGGTGGAGCAGCAAAGAAATTCTGCTTTGGTAAAGTGGGAAAATGAGGACTGTTGTTTCTCAACCATGTAA 1449 0.4369 MEPWSYVPEEKGYLFSDEMDFSLDAFMRGRKALVEWDNKASCNLERDGFNSEREAVKSMEFVDLGFPDLFRKPFNGSQLMGTSSCELDSNSSRRGNSSTHVIALDSSFGEEESESKHLTALIESKTHDSSLIDLKLGRLADFQGASSDTVAKEGFTLTPMHPTLLAKRARSSSSPSQTPLCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYLSGGKQHKILPSYHGAEYLGSSSHTRPQFSFQDIFQSGILFPAKYDQISQRGLVKLEEESIFSPQLAAAPITHGQELSSCALSLLSAQSQIPSRHSAGNLFSSSHVLQGICMRSGDDHVSETSLGISNVDRYVPDDSFPCGINSKEVIKDESAMLSEAGHPHQVRSDDVCQPLDVFNVKHRLSSEPGATVDLFQLSSHLQRVEQQRNSALVKWENEDCCFSTM* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1778 482 Gene3D - 171 242 IPR036893 GO:0003677|GO:0005634
Dod02g1778 482 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Dod02g1778 482 Pfam SBP domain 181 254 IPR004333 GO:0003677
Dod02g1778 482 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Dod02g1778 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 479 IPR044817 GO:0003677
Dod02g1778 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 50 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1778 Dod-Chr2 22845762 22850621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1778 95 479 SBP-box Gene Family AT1G69170 38.795 7.86e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod02g1778 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1778 - - gmx:100820149 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1778 02 22845762 22850621 Dod02g1778 02 22845762 22850621 ECH