Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1726 ATGGAGGAGAGGAAGTTTGTTTGCAAGTTTTGCAACAAGAGGTTCCCTTGTGGGAAGTCTCTTGGTGGCCACATCAGGACCCACATGAGTGATCAGCACTCAGCTCATGCTCATCATGCCAATGCTGCTGTGCTCAAGTATGAAGCTGTGAGGAAGAGGAAGAGGGATTTGTTTGTGTCTGAGGATGCTGATGCTGGTTTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGGTGTTGGTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGGTAACCTCATTTATGGCCTGAGAGAGAACCCCAAGAAAACCATGAGGTTTGTGCATTCCAATGCCACTTTGCAGCTTGACAAGTTCTGCAAAGAATGTGGGAAAGGTTTCCCATCACTGAAGGCTCTCTGTGGTCACATGGCTTGTCACTCAGAAAAGGAGAAGGGAACCAACAACAGCAGCAGCAACAACAACATCATCAACAACAATAACATGTTTGATAATAATAACACTTCTGGGATCAGTGAGAAGCAGAAATCGGTTACGGATAGCCAATCTGATACTGAGACTTCAGCTCCAAGGAGATCCATGAGGATGATGAGGTTCAAGAACCTCAGCAACAACCACCAACAACCATCTTATTCTGCTGCTGCTGCTCCTCCTCCTTTGGCGAATGGCTCTTCTTCTGTTTCAGAGGTTGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGATGCTGTCCAAGGATAACAGCCACAAGGGTCGTTTTGCTTTGTTCACTGAGTCTTCTGATAACAATTCCGTTGTTCTTGAGGCGAAATCAAAATCGAAATCGCCTTCTCTTGACACCAAGGTTACTGCTGCTATCAACAACGGTAAGGTTAAGGACTCTGTGTCTAATGGCTGTGGGGTTGTGGAGAAAAAGCTGCACAAGCACAGGGACATGAAGTTCAGGTATGCTGAGATTGATTATGACTCTGATAATTCAGATTCCGGGTATTTCAGATATGGTCCCAAAGAGATGGACTCTGATGATTCAAATGAAGGGTATTTCAGGAATGAAGTTAAGGCTTCAAAAGTGTTTGGGGATTATGATGTTGAATCGAGGAAGATGCTGAGCAGAGGAAGAAGCAAGAACAGTGCGTTCAAGAAATTAGTGTTGGAGGATTCGGTGAATGGAAGGGAAGATGGAGCTTCAAGGAGGAGACCGAACTATGATTCTTTTGGTCAAAATTCATTTGGGGTTTCTAGTAAGAAGATAGCAAAAGGTTTTGTCAATGATGAAGTCTTTGATCATGGTGGAAAAGGTTGGAAATATGAGTTCTTGACCAGGGAAAAGGACAATGTTTATGATGATTCGGCATATGAGAGTGATGAAAAGAGCACAGACACTGAGTCCTATCCTGCTCCTAAGCCTCACCACAGCAAGAACCTCAGCGTGAAGAAGTCCGGCAAGGGCAAGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGAACATGAGTGCCCCATCTGCAACAAAGTTTTCAGGTCAGGCCAAGCCTTGGGAGGTCACAAAAGATCCCATTTTATTGGAGTTTCGGATGAGAACACTCTGGTGATAAGACCAGGTGCTCCTCCTGCTGCTCCTGTTGTTCCTTGCCTAATTGATCTCAATCTACCGGCTTCTGTTGATGAATAG 1674 0.4534 MEERKFVCKFCNKRFPCGKSLGGHIRTHMSDQHSAHAHHANAAVLKYEAVRKRKRDLFVSEDADAGFGVGVGVGVGGVGGGGGGGAAAAAAGNLIYGLRENPKKTMRFVHSNATLQLDKFCKECGKGFPSLKALCGHMACHSEKEKGTNNSSSNNNIINNNNMFDNNNTSGISEKQKSVTDSQSDTETSAPRRSMRMMRFKNLSNNHQQPSYSAAAAPPPLANGSSSVSEVEQEQEEVARCLMMLSKDNSHKGRFALFTESSDNNSVVLEAKSKSKSPSLDTKVTAAINNGKVKDSVSNGCGVVEKKLHKHRDMKFRYAEIDYDSDNSDSGYFRYGPKEMDSDDSNEGYFRNEVKASKVFGDYDVESRKMLSRGRSKNSAFKKLVLEDSVNGREDGASRRRPNYDSFGQNSFGVSSKKIAKGFVNDEVFDHGGKGWKYEFLTREKDNVYDDSAYESDEKSTDTESYPAPKPHHSKNLSVKKSGKGKKKKLKSKKSKEHECPICNKVFRSGQALGGHKRSHFIGVSDENTLVIRPGAPPAAPVVPCLIDLNLPASVDE* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1726 557 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Dod02g1726 557 MobiDBLite consensus disorder prediction 206 235 - -
Dod02g1726 557 MobiDBLite consensus disorder prediction 145 191 - -
Dod02g1726 557 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Dod02g1726 557 ProSiteProfiles Zinc finger C2H2 type domain profile. 498 520 IPR013087 -
Dod02g1726 557 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 557 - -
Dod02g1726 557 MobiDBLite consensus disorder prediction 453 469 - -
Dod02g1726 557 ProSitePatterns Zinc finger C2H2 type domain signature. 500 520 IPR013087 -
Dod02g1726 557 Gene3D Classic Zinc Finger 1 64 - -
Dod02g1726 557 MobiDBLite consensus disorder prediction 143 194 - -
Dod02g1726 557 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 557 - -
Dod02g1726 557 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Dod02g1726 557 SUPERFAMILY beta-beta-alpha zinc fingers 120 520 IPR036236 -
Dod02g1726 557 SMART c2h2final6 119 141 IPR013087 -
Dod02g1726 557 SMART c2h2final6 498 520 IPR013087 -
Dod02g1726 557 SMART c2h2final6 6 28 IPR013087 -
Dod02g1726 557 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Dod02g1726 557 MobiDBLite consensus disorder prediction 474 494 - -
Dod02g1726 557 MobiDBLite consensus disorder prediction 453 497 - -
Dod02g1726 557 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Dod02g1726 557 Pfam C2H2-type zinc finger 498 520 - -
Dod02g1726 557 Pfam C2H2-type zinc finger 121 143 - -
Dod02g1726 557 Pfam C2H2-type zinc finger 6 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1726 Dod-Chr2 21665404 21667077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1726 1 557 C2H2 Transcription Factor Family AT1G26610 37.931 6.53e-85 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod02g1726 zf-C2H2_6 5.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1726 - - gmx:100805520 515.383