Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1660 ATGGCTCTCATTGGCTTGCTCTTGGTGTGTTCCCTCACAATGTTCTCCTATGCCTATGGCTATGGCTATGGCTATGGTGGAGGGTGGATTAATGCACGCGCTACCTTCTATGGAGGGAGTGATGCTTCAGGGACAATGGGTGGAGCCTGTGGGTATGGGAACCTCTACAGCCAGGGGTATGGAACAAACACTGCTGCACTGAGCACTGCTCTATTCAACAATGGCCTGAGCTGTGGCTCATGTTATGAGATTAGGTGCGTGAATGACCGCAGGTGGTGCCTGCCAGGCTCCATCATGGTCACTGCCACAAACTTCTGCCCACCAAACAATGCCTTGCCCAACAATGCAGGAGGGTGGTGCAACCCTCCTCAGCACCACTTTGATCTTGCTCAGCCTGTCTTCCTGCGCATTGCTCAATACAGAGCTGGAATTGTGCCTGTGTCTTACAGAAGGGTGCCCTGCAGGAGAAGGGGAGGCATCAGGTTCACCATCAATGGTCACTCCTACTTCAACCTAGTCCTCATCACAAACGTTGGTGGTGCTGGGGATGTTCATGCCGTGGCCATCAAAGGGTCCAGAACTGGTTGGATGCCAATGTCAAGGAATTGGGGCCAGAACTGGCAGAGCAACAACTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTCACCACCAGTGATGGCCGCAGTGTTGTCTCCTACAATGCTGCCCCAGCTGGATGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 759 0.5323 MALIGLLLVCSLTMFSYAYGYGYGYGGGWINARATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDRRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPQHHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRSVVSYNAAPAGWSFGQTYTGAQFR* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1660 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Dod02g1660 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Dod02g1660 252 PANTHER EXPANSIN-A10 23 252 - -
Dod02g1660 252 SUPERFAMILY Barwin-like endoglucanases 8 177 IPR036908 -
Dod02g1660 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Dod02g1660 252 SMART dpbb_1 64 149 IPR007112 -
Dod02g1660 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Dod02g1660 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Dod02g1660 252 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Dod02g1660 252 Gene3D - 21 155 IPR036908 -
Dod02g1660 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Dod02g1660 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Dod02g1660 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Dod02g1660 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Dod02g1660 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Dod02g1660 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Dod02g1660 252 PANTHER EXPANSIN-A15 23 252 IPR002963 GO:0009664
Dod02g1660 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Dod02g1660 252 Gene3D - 159 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1660 Dod-Chr2 20651390 20653940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1660 1 252 Expansin Gene Family AT2G03090 79.762 1.48e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1660 - - gmx:100796316 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1660 02 20651390 20653940 Dod02g1660 02 20651390 20653940 ECH
Dod02g1660 02 20651390 20653940 Dod05g1750 05 42910375 42912608 ECH
Dod02g1660 02 20651390 20653940 Dod02g2469 02 54480547 54482571 ECH