Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1658 ATGAAGTCATGGCCACCACAAAGTGTTGCATACTCTCCAAAAGAAAAAAACCTAAACGGCCTCAGCTGTTATCCTTTCTCCACTCCCTCCTCTTCCTCTTCTTCTCATTCTCCATCTCCTTCATTGGGAATGGTCAATGCAGACATGGGATCACTCTCCCTTGGCTCCAACTACAATGTTGTAATTTCAACCATTTCTTCATCTCAAGAGAGTAGTTATGCCATGGAAAATGGGAGCACAAGCTGGTCTTTTCCATTTATGAGGGAGTGCCTTTCCAGGAACTTTGAGGAACACCCCAGTAGCGAAGATGTAGAGGGTAAAGGTTCTGATTTCAGTGATGGGGTTGGGGAGAACAATGAGAAATTCATCAATGATGCAAGCTTCAACCAAGAGAACCCTAATGAGAATTCTGTCATGAGCAGCAAAGAGGTAGATAGTGAACAGTCCAAAATCTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTGAAGGAACTTGTGGCTCTTTATGGCCCTCAGAACTGGAACCTCATAGCTGAGAAGCTAGAAGGAAGATCAGGCAAGAGTTGTAGGTTGAGATGGTTTAACCAGTTGGATCCAAGGATCAACAAGAGGGCTTTCACCGAAGAGGAGGAAGAAAGGCTAATGCAGGCACATAGGATTTACGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCTGTCAAGAACCACTGGCATGTGATAATGGCTAGGAAGTACAGGGAACAATCCAGTGCATACAGGAGGAGGAGGAGGCTAAGCCAACCTGCAGTTTACACAAGAGTTGAGCAAAGCAGAAGCTTTGTCTCCAGAGATACCACAGCAGAAAAACAACCATTGTCATCACCCTTTTGTCTCAAACTCCCCAGCGGGGTACTCAGCAGTAACATGGCTAGTAGTTTCCCATGTACTGCATCCTTCCATGGAGCTTGTTGTGGTGGGGTTGAGTTAAATGGTTCAATGCACATGACTGGTTGGAGACAATCAATTTCAAGCGGTAGTGTGCGGCAGGCCCCTAATAGTACTGGCTTGTATGCTCAGCAGGCTCCACTTGATTTCTTCTCTGCATACACAACACCCCACGTTTCTTTGGCCAGGGAACTATCATCATCATCCGTTGCAGCGGAGAACAGGAATGAAGCCCTGATCATCAGTGACCCCCCAGATGCTGCTGTTACAGCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1266 0.4668 MKSWPPQSVAYSPKEKNLNGLSCYPFSTPSSSSSSHSPSPSLGMVNADMGSLSLGSNYNVVISTISSSQESSYAMENGSTSWSFPFMRECLSRNFEEHPSSEDVEGKGSDFSDGVGENNEKFINDASFNQENPNENSVMSSKEVDSEQSKICARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRRLSQPAVYTRVEQSRSFVSRDTTAEKQPLSSPFCLKLPSGVLSSNMASSFPCTASFHGACCGGVELNGSMHMTGWRQSISSGSVRQAPNSTGLYAQQAPLDFFSAYTTPHVSLARELSSSSVAAENRNEALIISDPPDAAVTAPPFIDFLGVGAT* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1658 421 Gene3D - 154 205 - -
Dod02g1658 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 200 IPR017930 -
Dod02g1658 421 ProSiteProfiles Myb-like domain profile. 154 200 IPR001005 -
Dod02g1658 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 255 IPR017930 -
Dod02g1658 421 PANTHER MYB PROTEIN-RELATED 383 421 - -
Dod02g1658 421 PANTHER MYB TRANSCRIPTION FACTOR 42 371 - -
Dod02g1658 421 PANTHER MYB TRANSCRIPTION FACTOR 383 421 - -
Dod02g1658 421 ProSiteProfiles Myb-like domain profile. 201 251 IPR001005 -
Dod02g1658 421 SMART sant 153 202 IPR001005 -
Dod02g1658 421 SMART sant 205 253 IPR001005 -
Dod02g1658 421 Gene3D - 207 272 - -
Dod02g1658 421 SUPERFAMILY Homeodomain-like 154 247 IPR009057 -
Dod02g1658 421 CDD SANT 157 198 IPR001005 -
Dod02g1658 421 Pfam Myb-like DNA-binding domain 154 200 IPR001005 -
Dod02g1658 421 Pfam Myb-like DNA-binding domain 206 249 IPR001005 -
Dod02g1658 421 PANTHER MYB PROTEIN-RELATED 42 371 - -
Dod02g1658 421 CDD SANT 208 248 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1658 Dod-Chr2 20612503 20614798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1658 132 298 MYB Transcription Factor Family AT1G69560 61.749 1.62e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g1658 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1658 K09422 - tcc:18610382 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1658 02 20612503 20614798 Dod02g1658 02 20612503 20614798 ECH