Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1655 ATGTGCCCGCTGGCACCTCATCCTTGCCTTAAAAATCTCCGTAATCACTATGATGAAAACTATTGTGATTGCGAACCCTGTCAGATAAACATGGCCCGGTCACCTCAACAACACACCACAAAGACACAAACACACAACCACACGACACCATACCACACCACACGGACACAACCACTGACCAACACTTACACACAATGTTCCAGATCCTTCCACGACCTTCCAGTGGGCGCACACCATTCCCCTTCCCTCCCCCAACAACCCCACCTTCTTATATCCCACAACAATTCTCACAACAACTCTCACAAATTCACAATACAGTCTTCCTCTTCTCGCTCTCTCTCTTCTTTTTTCTCACTCACACAAATCATTAATAGAGAAAAGGAAAAAAAAGAAGAAGAAAAACTCCATATGGGTTCTGAAACCGATGTGTCCGAAATCTCCGCTTTGTTCGAAAGACTGGTAAGAAACAGAGACATGTCACTCTTCTTGCCTTTCATATTTGGCCTCTCGGAACCCAACTCACGTGGTGAAAACACCACCGAAGAAGAACGCCAAGAAGACCAGGACGGTGAAACAGAGGGGGGGAGGAGGAGGAGGAGCACGGAAGCTCCCAACAGGGAAAGGATCATCCTAGTGAACCCCTTCACTCAGGGGATGGTGGTGATCGACGGCGCATCAAGCCTCGAGGCACTCTTGCGCGAAATTGGAAACAACGACAACAACAACAACAGCTTTAGCAAAGGCGGGCAGCCACCTGCTTCGAAGGAGTCCATAGAGGCGATGCCATGTGTCGAGGTGAAGGAAGGGGGAGAAGAAGGAGTGGGTGAGTGTGTGGTGTGTTTGGAGGAGTTTAGTGTTGGTGTGGTGGTTAAGGAGATGCCTTGCAGGCACAGGTTCCATCCAGATTGTATTGACAAGTGGCTGGGGATTCATGGGTCTTGCCCTCTTTGCAGGTATGAGATGCCAGTTGAGGAGAGAGGTGAGGGCAAGAAGAGGGATGAGGAAGGTGGAGAGGAGAGGAGGGTTGGTGGTGGTGGTGGTGGTGGTAATGGTGAAGTTTGGGTTAGTTTTTCTATCAATAGGGATAGTAGGAGCAGCCAGGAGGATCAAAATCAAGCTCCTGCACCTGGTCATGATTCAAGTGATTCCACATCCAGTCCTGGTGGTGATGCTCAAGTAGAGAGTTAG 1188 0.4941 MCPLAPHPCLKNLRNHYDENYCDCEPCQINMARSPQQHTTKTQTHNHTTPYHTTRTQPLTNTYTQCSRSFHDLPVGAHHSPSLPQQPHLLISHNNSHNNSHKFTIQSSSSRSLSSFFSLTQIINREKEKKEEEKLHMGSETDVSEISALFERLVRNRDMSLFLPFIFGLSEPNSRGENTTEEERQEDQDGETEGGRRRRSTEAPNRERIILVNPFTQGMVVIDGASSLEALLREIGNNDNNNNSFSKGGQPPASKESIEAMPCVEVKEGGEEGVGECVVCLEEFSVGVVVKEMPCRHRFHPDCIDKWLGIHGSCPLCRYEMPVEERGEGKKRDEEGGEERRVGGGGGGGNGEVWVSFSINRDSRSSQEDQNQAPAPGHDSSDSTSSPGGDAQVES* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1655 395 MobiDBLite consensus disorder prediction 172 205 - -
Dod02g1655 395 MobiDBLite consensus disorder prediction 189 205 - -
Dod02g1655 395 PANTHER - 145 328 - -
Dod02g1655 395 ProSiteProfiles Zinc finger RING-type profile. 277 318 IPR001841 -
Dod02g1655 395 Pfam Ring finger domain 276 318 IPR001841 -
Dod02g1655 395 MobiDBLite consensus disorder prediction 324 341 - -
Dod02g1655 395 SMART ring_2 277 317 IPR001841 -
Dod02g1655 395 SUPERFAMILY RING/U-box 276 323 - -
Dod02g1655 395 MobiDBLite consensus disorder prediction 324 395 - -
Dod02g1655 395 MobiDBLite consensus disorder prediction 356 395 - -
Dod02g1655 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 324 IPR013083 -
Dod02g1655 395 MobiDBLite consensus disorder prediction 35 57 - -
Dod02g1655 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 145 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1655 Dod-Chr2 20583362 20585021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1655 132 364 C3H Transcription Factor Family AT1G26800 45.064 2.17e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1655 - - ccaj:109816232 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1655 02 20583362 20585021 Dod02g1655 02 20583362 20585021 ECH