Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1652 ATGGAGAAAGAAGCCGCATTCGAGGACAAAGCGGAAAACGGCGTCAAGCTCTGCGTTTTGGATTTCGACGTCGGGAACGGGAAGCAACAAGCGACCCTCCTCAACGCGCTCTTCACGCATCTCACCGGGAAGCCAGCGACGGTGAAGCTCGCCGCCGTGGCAGAGAACGGCAGCCACGAGAGATTGAAGGCGGTGAGCGAGTTTCTCGAACGGCAAGCCGAGAGGCTAGGGATTAGGTTCGAGTTCAAGGTAGTGACTCACAACGAGTTGACTCACACCGAGGCTGGTGAATGCAGTGGAGGAGAGGACAGAGCTCTATGCCTCTCTCAGGACTTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGAGCATACTGTGACACCAAGCAGAGCTGCTGTTATCCAAAGACAGGAAAACCTGCAGCAGATTTCGGCATCCATGGGCTGTGGCCTAACTACAATGATGGATCCTGGCCCTCAAACTGTGATCCTGACAGTGTCTTTGATAAATCTCAGCTCTCAGACCTCATTAGCAGCATGGAGAAGAGCTGGCCATCCTTGAGCTGCCCAAGCAGCAATGGCCTGAGGTTCTGGTCACATGAATGGGAGAAACATGGCACTTGCGCAGAATCTGAGCTTGATCAGCATGATTACTTTGAAACAGCACTTAAATTAAAGCAGGAAGTGAATCTTCTTCGGATCCTCAAGAATGCAGGGATTGAACCAGATGATGGATTTTACAGCCTAGACAGCATTTCTGAGGCAATAAAAGAGGGTAGTGGGTTTACTCCAGGGATTGAGTGTAACAGGGATTCAGCACATAACAGCCAGCTCTACCAAGTTTACATGTGTGTGGACACTTCTGGGTCAAACCTCATTGAGTGCCCTATACTTCCAAAAAGCAAATGTGGTTCACAAATCCAATTCCCCAAGTTTTAA 939 0.4973 MEKEAAFEDKAENGVKLCVLDFDVGNGKQQATLLNALFTHLTGKPATVKLAAVAENGSHERLKAVSEFLERQAERLGIRFEFKVVTHNELTHTEAGECSGGEDRALCLSQDFDFFYFVQQWPGAYCDTKQSCCYPKTGKPAADFGIHGLWPNYNDGSWPSNCDPDSVFDKSQLSDLISSMEKSWPSLSCPSSNGLRFWSHEWEKHGTCAESELDQHDYFETALKLKQEVNLLRILKNAGIEPDDGFYSLDSISEAIKEGSGFTPGIECNRDSAHNSQLYQVYMCVDTSGSNLIECPILPKSKCGSQIQFPKF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1652 312 ProSitePatterns Ribonuclease T2 family histidine active site 1. 144 151 IPR018188 GO:0003723|GO:0033897
Dod02g1652 312 Pfam Ribonuclease T2 family 112 295 IPR001568 GO:0003723|GO:0033897
Dod02g1652 312 SUPERFAMILY Ribonuclease Rh-like 107 311 IPR036430 GO:0003723|GO:0033897
Dod02g1652 312 ProSitePatterns Ribonuclease T2 family histidine active site 2. 197 208 IPR033130 -
Dod02g1652 312 PANTHER RIBONUCLEASE T2 108 312 IPR001568 GO:0003723|GO:0033897
Dod02g1652 312 CDD RNase_T2_euk 112 309 IPR033697 -
Dod02g1652 312 Gene3D - 106 312 IPR036430 GO:0003723|GO:0033897
Dod02g1652 312 PANTHER F7A19.32 PROTEIN 108 312 - -
Dod02g1652 312 Pfam GRAS domain family 11 94 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1652 Dod-Chr2 20532600 20542832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1652 19 115 GRAS Transcription Factor Family AT5G52510 35.455 3.53e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod02g1652 Ribonuclease_T2 3e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1652 K01166 - gmx:100778239 418.698