Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1643 ATGGAACTTAGACTTGTCAATGGAATAGCATACAGTGAGCCATGGTTCGGTCGTTGGGGCTACAAATTTGGTAGAGGATGCTTTGGTGTGACTCAATCCATGTACCAAAAAGCCATAGAAGCAATAAGGAGCATGCCACTATACTTGCTCACACACCACATTGGCAATTCCAACCATGACATACCAATCATTTTCTCAAGGTACCAAACACTTTCGGATCAGTCCCTAGTGACCCTTGGTGACCTATTTCGTTACATGCTAGAGCTAAGGTCACGCCTCCCCGGTGAAACAACATCATGCATTGGCTCCTACAACACTAGTGCCTTGGTTGAGACCAATTGCCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAGAACCGAGTCTAGATGGATCTCAAGGCAAGAGGTTAGGGATGCCGCACGTGCATACATTGGTGACACGGGTTTGTTGGATTTTGTGCTCAAGTCTCTAGGGAACCACATTGTTGGGAACTACTTGGTCAGGAGAAGTTTGAATCCTGTGACCAAAGTGTTGGAGTATTGCTTGGAGGACATTTCCAATCATGAAGCTTTGGTCATGATTAGTAATAATAATACTAATAAAGTTAAGGACAAGTACAAGATTACAAGGGCCCAACTCATGAAGGACATGCTCTATTTGTACAAGTACATCCTCATTGACCCAAAACCAATGATGGGGTCAGAGTTTCTCAATGCTATACCATTGGCGGCTAGGATAATTCTTGACACCAAGTATCTTGTCAAAGATTACCTTGGAGAGGTTCCTTTTCACGTTGAATTGGGCTCTGAAGGGAAACTCAACCTTCACTGTACAATTTTGTTAAGGAGCAATTCAGGCCTTGATGAGTATCTAAGCAAGGCCATTATGCCACCCTATGAGTGTATCACATTGAAAAGCAATGCTACAATCAGTGAGTTGAAGCTAGAAGTTGAAAGGAGTTTCAGGGAAATCTATTGGGGGTTAAGGAGGTTTGTGGTGGAGTCAATTGGGAATTTGAATGCCAATAATGGGAAAGAAATGGTTTTTGGGCTAATTGAAGCGGGTAGAAAAATTGTGCTTGAGGGTTGGCTTGGTAACATGGGAATGAACACGATTGGGCAAATATGTGAAAGTGATCCAAGCAATGGCGTTGTGGAGTGCACTTGTGGAACTAAAGAAGATGATGGGGAGAGGTTGATCTCGTGTGATATTTGTGAAATTCGGCAGCACACTAGGTGTGTTCGCATTCCGAATGATGAAGAAATCCCTCATATCTTTTTGTGTAAAAGATGTGAGCAAGGAATTGTTATGTTCCCTTCGTTGCCATAG 1356 0.4314 MELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIGNSNHDIPIIFSRYQTLSDQSLVTLGDLFRYMLELRSRLPGETTSCIGSYNTSALVETNCRWSPKRIEMATRVIVEALKRTESRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNHEALVMISNNNTNKVKDKYKITRAQLMKDMLYLYKYILIDPKPMMGSEFLNAIPLAARIILDTKYLVKDYLGEVPFHVELGSEGKLNLHCTILLRSNSGLDEYLSKAIMPPYECITLKSNATISELKLEVERSFREIYWGLRRFVVESIGNLNANNGKEMVFGLIEAGRKIVLEGWLGNMGMNTIGQICESDPSNGVVECTCGTKEDDGERLISCDICEIRQHTRCVRIPNDEEIPHIFLCKRCEQGIVMFPSLP* 452
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1643 451 SMART PHD_3 395 441 IPR001965 -
Dod02g1643 451 SUPERFAMILY FYVE/PHD zinc finger 385 443 IPR011011 -
Dod02g1643 451 Pfam PHD-finger 396 442 IPR019787 -
Dod02g1643 451 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 451 - -
Dod02g1643 451 CDD PHD_MMD1_like 395 440 - -
Dod02g1643 451 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 1 451 - -
Dod02g1643 451 ProSitePatterns Zinc finger PHD-type signature. 396 440 IPR019786 -
Dod02g1643 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 444 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod02g1643 Dod-Chr2 20438931 20440286 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1643 1 451 PHD Transcription Factor Family AT5G22260 49.894 6.86e-151 442
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod02g1643 PHD 7.2e-08 CL0390
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1643 - - gmx:100780210 753.051