Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1642 ATGAGCGATCACCTGGTGCTCTTCGTTGACCGTCTCGTGCATCCCGCTGACCCCGTCGAGCAGCCTGCTCAGCTCCCCGCCGACCCCTCGCCGCCTGCGCCGCCGTCGAGTGCGGCCGCTGGACCGTCCGGATCCGCTCCAACGGCTGATCGCGACGGCGACGGCGAGTCGGAGCGCGGCGACGATGAGGAAGAGCCGCTGATCCAGATGGTGGAGTGCCGTATTTGTCAGGAGGAAGATGCCGTTTCCAATTTGGAGACTCCCTGCGCGTGCAGAGGAAGTCTCAAGTATGCTCACAGAAAATGCGTCCAGCATTGGTGCAATGAGAAAGGAGATGTGACTTGTGAAATATGTCATCAGCCATATCAACCTGGTTATACTGCACCACCACCTCGCCCTCAGCCCGAAGAAACTACCATTGATATAGGAGGCTGGACAATATCTGGCACGCCTTTGGATTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGTCAATTTTTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTAGCAGATGGTGATGCTTCTGACGATGACCCATCCAGTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGACGACAACGGCAACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAATTTGCTTTTCTTCTACATACCGGGCAGCGCAGGGGTCTACAAGTTGCGATAGCCCCAGGACCCACAGTGCATCAGGAACAAAGTGTAGTTTGA 885 0.5311 MSDHLVLFVDRLVHPADPVEQPAQLPADPSPPAPPSSAAAGPSGSAPTADRDGDGESERGDDEEEPLIQMVECRICQEEDAVSNLETPCACRGSLKYAHRKCVQHWCNEKGDVTCEICHQPYQPGYTAPPPRPQPEETTIDIGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVADGDASDDDPSSFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQQRQEAAALAATQFAFLLHTGQRRGLQVAIAPGPTVHQEQSVV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1642 294 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 260 IPR033275 -
Dod02g1642 294 SMART ringv_2 72 119 IPR011016 GO:0008270
Dod02g1642 294 MobiDBLite consensus disorder prediction 22 38 - -
Dod02g1642 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 260 - -
Dod02g1642 294 Coils Coil 160 180 - -
Dod02g1642 294 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Dod02g1642 294 Pfam Protein of unknown function (DUF3675) 124 242 IPR022143 -
Dod02g1642 294 SUPERFAMILY RING/U-box 71 123 - -
Dod02g1642 294 CDD RING_CH-C4HC3_MARCH 73 119 - -
Dod02g1642 294 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Dod02g1642 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 128 IPR013083 -
Dod02g1642 294 MobiDBLite consensus disorder prediction 17 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1642 Dod-Chr2 20429540 20433086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1642 72 118 C3H Transcription Factor Family AT2G37950 44.000 1.51e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1642 - - lang:109359054 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1642 02 20429540 20433086 Dod02g1642 02 20429540 20433086 ECH