Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1641 ATGATTTCCTTCGTTGGAGAGACTGACATGGACTTAACCCCAAGCACCATCATCACCCAAACGTCAGTCACAAACACACAAACCCCACCACCACCACCACCACCACCAACAACAACAACAACAACCACCACCCAATTACCCAACAACAACAGCACCTCCAACCCCAAGTCCTCTTCTTTCACCAACGGTTCCCTCAAACGCCACAACCCAAACAACGCCGCCGGATCACCGCCGAAACAACCACCGTCCCCCATGGTGGTTTTTTCTTACAAAGAGTGCCTCAAGAACCATGCAGCCACCCTAGGTGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCTTCCTCCTCATCCAACCCCGCCGAGCCACGATCCCTCACGTGCGCCGCATGTGGCTGCCACCGCAACTTCCATCGCCGAGACCACCACACACATCACCAAGATCAATATCACCACCACCCTAACTTCCTCAGCTTCTACCACTCACCACCGCAACGGCAACCTACCCTCTTCTCTGGGCCCACACCGTGGGCTCAGCATCAGCACAAGCCCAAGCCTCAGCCCAAGCCCATCACCGAGCCCCATTTCAAGCCCATCACCGCCGCCAATCTCGCACCATTTCCCACCTTATAA 633 0.5656 MISFVGETDMDLTPSTIITQTSVTNTQTPPPPPPPPTTTTTTTTQLPNNNSTSNPKSSSFTNGSLKRHNPNNAAGSPPKQPPSPMVVFSYKECLKNHAATLGGHALDGCGEFMPSSSSNPAEPRSLTCAACGCHRNFHRRDHHTHHQDQYHHHPNFLSFYHSPPQRQPTLFSGPTPWAQHQHKPKPQPKPITEPHFKPITAANLAPFPTL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1641 210 MobiDBLite consensus disorder prediction 175 195 - -
Dod02g1641 210 Pfam ZF-HD protein dimerisation region 89 142 IPR006456 -
Dod02g1641 210 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 90 141 IPR006456 -
Dod02g1641 210 MobiDBLite consensus disorder prediction 20 84 - -
Dod02g1641 210 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 21 197 - -
Dod02g1641 210 MobiDBLite consensus disorder prediction 26 40 - -
Dod02g1641 210 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 197 - -
Dod02g1641 210 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 90 141 IPR006456 -
Dod02g1641 210 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1641 Dod-Chr2 20422325 20423270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1641 85 141 ZF-HD Transcription Factor Family AT5G15210 77.193 4.69e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod02g1641 ZF-HD_dimer 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1641 - - gmx:100785050 156.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1641 02 20422325 20423270 Dod02g1641 02 20422325 20423270 ECH