Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1615 ATGGAATTGGAAGCTGATCATCATCAAAACGGGATCCGAAGCAGGCCCAATTTCCCTCTTCAGCTATTAGAGAAAAAAGACGATGACGACGCCCCAGAGCAACCATGCTCCACAGCCGCACACGACGGCGCCGCCACCACCACCATCAACAACAGCCTCAGTTTAACGGAGCAGCAGCCGAACAAGAAGCCGCCGCCGAAACGGACGTCAACAAAGGACAGGCACACAAAAGTGGACGGCCGCGGCCGCCGGATCCGGATGCCGGCGGCCTGCGCCGCCCGGGTGTTCCAGCTGACGCGGGAATTGGGGCACAAGTCTGACGGCGAGACGATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCCGTGATCGCCGCCACCGGCACCGGCACCATCCCCGCGAACTTCACCTCCCTCAACATCTCACTCCGAAGCTCCGGCTCCACCGTGTCAGCGCCGTCGCACTACTTCCGGGGAAACTATTTCAACCCTAGCACTTTCTCTTCCGCCGCCGTGGCAGCAGCCGCCGCCGGAGGCAGGAACCGCGGAGGCGGAGACTGGGACCGGAGCATGGGCATGAACATGAACATGAACATGGCTGTGATGGAAGATTCTAGAAGGCTGTTGTTCCCCGGCTCCTCGGAGAATTGTTCTAATTCCATGGTGTTGAATTTCAGCCCTAGCGTGAATGCCGCTCTACAGGCGAAGCCGGAGCTCAGGGAAGACGGTGGGGGAGACGGTGGCAGTGGCGGCGGCGGCGGCGGCAGTGGTGGTGGTGGAAGCCTTGAGTTGGTGGATTGTGATGGAAGTTTGGGAAGAAAGAGAAGGGTGGGACAAGAGGTTTCACATGTAGGAAGCTACTTGTTACAATCTAGTACTGCAGGGTCGCTTCCGGCGAGTCATGCTTCCAATCCGGCGACGTTTTGGATGGTGGCGGGTCATGGCCACCAAGCCATGAATAGTGGCGGTGGCGGTGGCGGCGGAGGTAATAACGGTGGTGATCCCATTTGGGCTATTCCCTCTTTGGGGAATAGTGGAGTGTATAGAGGGGCTATGCCTAGTGGAGTAGGTGGAATTCATTTCATGAATTTTGCTTCTCCAATGTCTCTAATGCCGGGTGGACAACTAGGCTCAGGGATGGTTGGTGGCGGCGGCGGCGCCATGCTTGGTGAAAGCAACTTAGGTATGCTTGCAGCCCTTAATGCCTCCTATAGGCAGATTCCAACCAACGGCGTTTCGGAGTCTCCGGCGAGCAACGGGCATCAACATCATGGAGGTGATGATGGCCATGAAACAACCAGTCAACAACATTCGTGA 1314 0.5791 MELEADHHQNGIRSRPNFPLQLLEKKDDDDAPEQPCSTAAHDGAATTTINNSLSLTEQQPNKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVSAPSHYFRGNYFNPSTFSSAAVAAAAAGGRNRGGGDWDRSMGMNMNMNMAVMEDSRRLLFPGSSENCSNSMVLNFSPSVNAALQAKPELREDGGGDGGSGGGGGGSGGGGSLELVDCDGSLGRKRRVGQEVSHVGSYLLQSSTAGSLPASHASNPATFWMVAGHGHQAMNSGGGGGGGGNNGGDPIWAIPSLGNSGVYRGAMPSGVGGIHFMNFASPMSLMPGGQLGSGMVGGGGGAMLGESNLGMLAALNASYRQIPTNGVSESPASNGHQHHGGDDGHETTSQQHS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1615 437 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Dod02g1615 437 MobiDBLite consensus disorder prediction 20 35 - -
Dod02g1615 437 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 8 435 - -
Dod02g1615 437 MobiDBLite consensus disorder prediction 420 437 - -
Dod02g1615 437 MobiDBLite consensus disorder prediction 407 437 - -
Dod02g1615 437 MobiDBLite consensus disorder prediction 237 265 - -
Dod02g1615 437 Pfam TCP family transcription factor 69 167 IPR017887 -
Dod02g1615 437 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 435 IPR005333 GO:0003700
Dod02g1615 437 MobiDBLite consensus disorder prediction 1 82 - -
Dod02g1615 437 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1615 Dod-Chr2 20129013 20131867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1615 16 374 TCP Transcription Factor Family AT3G47620 39.904 9.65e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dod02g1615 TCP 2.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1615 - - adu:107489244 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1615 02 20129013 20131867 Dod02g1615 02 20129013 20131867 ECH
Dod02g1615 02 20129013 20131867 Dod05g1730 05 42693260 42696701 PCT