Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1608 ATGTCTAGCAGAAGATCTCGTTCGAGACAATCGGGTGTTTCCACTGAGATCACTGATGCTCAAATCACCGATCTCGTCTCAAAGTTGCAACAACTCATCCCTGAGCTTCGCGCAAGGCGCTCCGACAAGGTTTCAGCTGCTAAGGTGTTGCAGGAGACTTGCAACTACATCAAGAACTTGCACAGAGAGGTTGATGATCTAAGTGACCGATTGTCAGAGCTTTTGGCCAACACAGACTCCAACAGTGCTGAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4716 MSSRRSRSRQSGVSTEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAEAAIIRSLLM* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1608 93 Coils Coil 57 77 - -
Dod02g1608 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 80 IPR036638 GO:0046983
Dod02g1608 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Dod02g1608 93 CDD bHLH_AtPRE_like 17 77 - -
Dod02g1608 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Dod02g1608 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Dod02g1608 93 Gene3D - 19 89 IPR036638 GO:0046983
Dod02g1608 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1608 Dod-Chr2 19917262 19918611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1608 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 68.085 2.59e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g1608 HLH 8.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1608 - - gmx:100804830 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1608 02 19917262 19918611 Dod02g1608 02 19917262 19918611 ECH
Dod02g1608 02 19917262 19918611 Dod05g1722 05 42582134 42584894 ECH