Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1606 ATGGCTTTCTTCCCTGCAAATTTCATGCTACAAACCGCTAACCATGATGATCACCGACATCCACCTTCTCTGAACTCAATTCTACCCACATGTGCACCACAAGATTATCATGGGGGAGTATCCTTTCTAGGGAAGAGATCTATGTCGTTTTCAGGGATTGAACTTGGAGAAGAGGCTAATGCTGAGGAAGATTTGTCTGATGATGGATCACAGGTAGGGGAGAAGAAGAGGAGGCTCAACACGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGCTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGGCTGCAGCCAAGACAGATTGCCATATGGTTCCAGAATAGGAGGGCTAGATGGAAGACCAAGCAGCTGGAGAAAGACTATGATCTCCTTAAAAAACAATATGAAGCTATCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAGTCTATCAACCTCAACAAAGAAACAGAAGGGTCCTGCAGCAACAGAAGTGAGAACAGCTCAGACATCAACTTGGACATCTCAAGGACACCGGCTATTGACAGTCCTCTATCCACACATCAGACCACTAGCAGACCCCTCTTTCCATCCACTGCTGCTAGGCCTACTACTGCAGGATCAGTGCCTCATCAGCTTTTCCAAACTTCTTCAAGGCCAGAACACCTCCAATGCCAGAAGATGGATCAAATGGCAAAAGAAGAGAGCTTAAGCAACATGTTTTGTGGGATGGATGATCAATCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 858 0.4604 MAFFPANFMLQTANHDDHRHPPSLNSILPTCAPQDYHGGVSFLGKRSMSFSGIELGEEANAEEDLSDDGSQVGEKKRRLNTEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKKQYEAIKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDINLDISRTPAIDSPLSTHQTTSRPLFPSTAARPTTAGSVPHQLFQTSSRPEHLQCQKMDQMAKEESLSNMFCGMDDQSGFWPWLEQQHFN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1606 285 SMART HOX_1 73 134 IPR001356 GO:0003677
Dod02g1606 285 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Dod02g1606 285 Gene3D - 67 136 - -
Dod02g1606 285 CDD homeodomain 75 131 IPR001356 GO:0003677
Dod02g1606 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 285 - -
Dod02g1606 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 285 IPR045224 GO:0003700
Dod02g1606 285 MobiDBLite consensus disorder prediction 175 231 - -
Dod02g1606 285 MobiDBLite consensus disorder prediction 178 231 - -
Dod02g1606 285 MobiDBLite consensus disorder prediction 59 78 - -
Dod02g1606 285 Coils Coil 122 170 - -
Dod02g1606 285 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Dod02g1606 285 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Dod02g1606 285 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Dod02g1606 285 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Dod02g1606 285 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Dod02g1606 285 Pfam Homeodomain 75 128 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1606 Dod-Chr2 19856351 19858645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1606 1 285 Homeobox Transcription Factor Family AT1G69780 64.310 3.76e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod02g1606 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1606 K09338 - gmx:100814080 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1606 02 19856351 19858645 Dod02g1606 02 19856351 19858645 ECH
Dod02g1606 02 19856351 19858645 Dod02g1579 02 19317263 19319343 PCT