Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1603 ATGCAAGATATGAAGAAGCAGCAGAAGCAGAAGCAGGTGGCCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATATTGAGGGAGCAGATAGGCATCCATGGAACTGAAAATTGGGCAATTATTGCTTCAAAGTTCAAGGATAAAACGACTAGACAGTGCAGAAGAAGATGGTACACTTACCTGAATTCTGATTTCAAGAAAGGAGGATGGTCCCCAGAAGAAGACATGATCTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGGTTCTCCACCTTGTGCAAGAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAGAACAACACTTCATACATCAATTCAAATAATAAGAGGATTATTTTCCAACATGGGTATAATACAGATGCAGCATCAGAATCTGCTGTCACTGTTAAGAGGATAAGATCACATAAACAAAATGTAACTTCGACAATTCAGCAGACAAGAGCACCATTTGCAGTATTGGCTCAGAACTCTCATGATGTCAACAACTTGCCAGACCAGCATCATGTCTGCAGTGCAAAGTTTGGCGGTCATGCCCAAAACAACAAGATCGAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAGCGCATTGATGCAACAAGCAGAATTACTGAGTTCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTGGAAAATGCGTGGAAGGTTCTTCAAGAGTTTCTGAGTCGAACCAAAGAATCTGATGTTCCCAGATATAAGATTCCAGATCTACAGCTTGTAGATCTTAGAGATCTGCTGGAGGACTTAAAGAGTAGTAGTGAAGAGATCCAGCCATGTTGGAGGCAAATGGAACTATATGAAGAGTCTCCTGGAAGTTCTGAATACAGCACAGGATCAACTATCCTGCCCCATTCAGTTGGTGATAATTTGGAACACTCACTGCATCAAGATATTGGAACTGAACTGAGGTCTATACAAGTTGGAGATCAAAAAGGAGTTGGAGGATGTGAACAAGGGATTCTTTCTACTGCAATTTTGGATCAAGCAGATATATTCCCATCTTGTGAGGAACAGATGAACAATGATGGCATTGTTTCTGCCTCATCAATGACAGAGTTCAGTTCCCCTCTTCAAGTTACTCCTCTCTTCAGATCCTTGGCTGCAGGAATCCCTAGCCCACAATTTTCAGAGAGTGAGAGGAACTTCCTTATGAAAACACTTGGAATGGAATCTCCATCCCTCAACACAACTGCCAACCCCTTGCAACCGCCACTCTGCAAAAGATCCTTGCTACATAGTTTATAA 1386 0.4163 MQDMKKQQKQKQVANEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMILCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIIFQHGYNTDAASESAVTVKRIRSHKQNVTSTIQQTRAPFAVLAQNSHDVNNLPDQHHVCSAKFGGHAQNNKIEGTFLKKDDPKISALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLSRTKESDVPRYKIPDLQLVDLRDLLEDLKSSSEEIQPCWRQMELYEESPGSSEYSTGSTILPHSVGDNLEHSLHQDIGTELRSIQVGDQKGVGGCEQGILSTAILDQADIFPSCEEQMNNDGIVSASSMTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNTTANPLQPPLCKRSLLHSL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1603 461 PANTHER TRANSCRIPTION FACTOR MYB88 9 458 - -
Dod02g1603 461 Gene3D - 79 148 - -
Dod02g1603 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Dod02g1603 461 ProSiteProfiles Myb-like domain profile. 28 71 IPR001005 -
Dod02g1603 461 Gene3D - 15 76 - -
Dod02g1603 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Dod02g1603 461 Coils Coil 1 24 - -
Dod02g1603 461 CDD SANT 80 121 IPR001005 -
Dod02g1603 461 MobiDBLite consensus disorder prediction 1 24 - -
Dod02g1603 461 SMART sant 24 73 IPR001005 -
Dod02g1603 461 SMART sant 76 124 IPR001005 -
Dod02g1603 461 SUPERFAMILY Homeodomain-like 24 118 IPR009057 -
Dod02g1603 461 CDD SANT 27 71 IPR001005 -
Dod02g1603 461 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Dod02g1603 461 Pfam Myb-like DNA-binding domain 28 86 - -
Dod02g1603 461 PANTHER MYB PROTEIN-RELATED 9 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1603 Dod-Chr2 19791664 19797467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1603 66 461 MYB Transcription Factor Family AT1G14350 52.683 8.16e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g1603 Myb_DNA-bind_6 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1603 K09422 - gmx:100807667 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1603 02 19791664 19797467 Dod02g1603 02 19791664 19797467 PCT