Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1592 ATGGTGCAGCTACACTCTTCACCAGCACCAACAACACACCCTTCCATTAAGCTGCTATGCCCACTCCCAAACCACCACACCTTCACTCCGAATTCCGTTCCTCTGAGGCCTAAACCTTCTTCTTCTTCATTTGTGTCCACAGTACCCTCCTCCACCTTCTCCTCCACCCTCCCTTCCCTATCCGTCAAATGCAGCCGCGCCGACCTCTTCGCCTCCTCACCATCACGACGCCCGCCACCGCCACCACCAAAACCACCATCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTGGGTCACTCGATTTACAAAGGGAAGGCTGCACTCACTGTGTCTCCCAGACCTCCGGAATTTGCAACACTCGATTCTGGGGCATTCAAAGTATCCAGGGAAGGCTATATCCTGCTTCAGTTTGCTCCTGCTGTTGGTATGCGCCAATATGATTGGAACAGGAAGCAGGTTTTCTCACTATCAGTGAGTGAAATGGGAACTCTGATTAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTTAAGGGCAAAAGTGATGAAGGCAAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTATGGATGTTTCTGGTCACTTATTTAACCTGAGTGTTCAAAACAAGCTTGAGAACATTGACGAAAGCATGTTTATCCCTATTACTAAAGCAGAGTTAGCAGTTTTCAGCTCAGTTTTCAATGTATGA 720 0.4792 MVQLHSSPAPTTHPSIKLLCPLPNHHTFTPNSVPLRPKPSSSSFVSTVPSSTFSSTLPSLSVKCSRADLFASSPSRRPPPPPPKPPSVGALPPRVYVGHSIYKGKAALTVSPRPPEFATLDSGAFKVSREGYILLQFAPAVGMRQYDWNRKQVFSLSVSEMGTLISLGARESCEFFHDPFKGKSDEGKVRKVLKVEPLMDVSGHLFNLSVQNKLENIDESMFIPITKAELAVFSSVFNV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1592 239 MobiDBLite consensus disorder prediction 74 90 - -
Dod02g1592 239 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 79 238 - -
Dod02g1592 239 Pfam Whirly transcription factor 101 236 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dod02g1592 239 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 79 238 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dod02g1592 239 MobiDBLite consensus disorder prediction 1 21 - -
Dod02g1592 239 SUPERFAMILY ssDNA-binding transcriptional regulator domain 93 238 IPR009044 GO:0003677|GO:0006355
Dod02g1592 239 Gene3D Transcriptional Coactivator Pc4; Chain A 87 239 IPR009044 GO:0003677|GO:0006355
Dod02g1592 239 MobiDBLite consensus disorder prediction 70 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1592 Dod-Chr2 19566601 19571156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1592 54 238 Whirly Transcription Factor Family AT1G14410 67.027 2.49e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Dod02g1592 Whirly 6.3e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1592 - - lang:109355868 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1592 02 19566601 19571156 Dod02g1592 02 19566601 19571156 PCT