Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1590 ATGGCGAAAGTGTATATGTTGTTCCTTTCACTGTGTTTGGTGGCCTTCATGCCAACCTTGCATGCCAATATCTTGGAGAATAGCACGTACTGGGAGGAACGTGTCCCAGAGTTTGATGAATACTGGAAGGGAAGAGCAGCCATTGCTGAAAAGGCCAACAACGAAGCTTATTGCCCTGACCCACTTGAAGTCACCGGCAACTTCACTTCTGGCGTTTGCGAAATCCTAATTGGCCAAAAGAAAGGAAGAAGGAACTTGAAGGGGAAAAAATTTGGTCCATGCATGGCAACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCCAATTGGGCAAATTACCGCCAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGAAACACTGTTGGTGGAAAGGGTGGTCCATTCTATGTGGTGACTGATCCCTCAGATAATGACATGCTGAATCCAAGACCAGGTACCCTACGCCATGCAGTTACAAGAACTGGTCCCTTATGGATCATCTTTGCTCGCAGCATGGTGATTAGGCTCAGCCAGGAGCTCATAATGGCCAGTGACAAGACCATTGATGGCAGAGGGGTTGATGTTTACATTGCCAATGGGGCTGGCATCACCATCCAATTCGTCCGCAATGTCATCATCCATGGAATTAAGATGTATAACATTTTGCCAGCTAGTGGTGGACTTATCAGAGATTCTGAGACCCACTATGGTTATAGGACTCGAAGTGATGGTGATGGAATCTCCATCTTTGGCGCCAGCAATATTTGGATTGACCATGTTTCCATGAAAAAGTGCTCAGATGGCATCATAGATGCCATTATGGGATCCACTGCAATTACCATCTCCAATTGCCATTTCACAGACCACAATGAGGTGATGCTGTTTGGTGCCAGTGACAGCTACACTGGTGATAAGATAATGCAAATCACTCTTGCATTCAACCACTTTGGTAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATACGGTTTCATCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGAATCCTACCATTATTAGTGAGGGCAATCGATTCATAGCCCCTGATAACATCCATGCTAAACAGATAACAAAGACGGATTACGCACCAGAAGAGGAATGGAAAAATTGGCAATGGAGATCAATCAATGATGAGTATATGAATGGAGCATTTTTCAGAGAATCTGGACCTGTGCTCAGGAACAGGCCATTCTCAAGCAAGGACATGATCAAAGCTAAGCCTGGCTCATTTGTGGGAAGGCTTACTCGATATGCTGGCATCCTTAAATGCAGAGCTGGTAAACCTTGTTAG 1344 0.4539 MAKVYMLFLSLCLVAFMPTLHANILENSTYWEERVPEFDEYWKGRAAIAEKANNEAYCPDPLEVTGNFTSGVCEILIGQKKGRRNLKGKKFGPCMATNPIDRCWRCDPNWANYRQKLADCVQGFGRNTVGGKGGPFYVVTDPSDNDMLNPRPGTLRHAVTRTGPLWIIFARSMVIRLSQELIMASDKTIDGRGVDVYIANGAGITIQFVRNVIIHGIKMYNILPASGGLIRDSETHYGYRTRSDGDGISIFGASNIWIDHVSMKKCSDGIIDAIMGSTAITISNCHFTDHNEVMLFGASDSYTGDKIMQITLAFNHFGKRLVQRMPRCRYGFIHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPDNIHAKQITKTDYAPEEEWKNWQWRSINDEYMNGAFFRESGPVLRNRPFSSKDMIKAKPGSFVGRLTRYAGILKCRAGKPC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1590 447 PANTHER PECTATE LYASE 6 447 - -
Dod02g1590 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Dod02g1590 447 PANTHER PECTATE LYASE 18-RELATED 6 447 IPR045032 GO:0030570
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Dod02g1590 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Dod02g1590 447 Pfam Pectate lyase 182 363 IPR002022 -
Dod02g1590 447 SMART amb_all 172 369 IPR002022 -
Dod02g1590 447 Pfam Pectate lyase, N terminus 35 86 IPR007524 GO:0030570
Dod02g1590 447 Gene3D - 97 440 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1590 Dod-Chr2 19551242 19553560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1590 6 447 Polysaccharide Lyase AT1G14420 59.041 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1590 K01728 - gmx:100796307 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1590 02 19551242 19553560 Dod05g1406 05 38393362 38399123 PCT