Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1583 ATGGAGTCATTGGAACCCAGAGAATCATCAATGATTTCAATCTCAACAGCAACAGAGCACTCCTTCGACTCCCGCTACTCCCGCGAAGCCCGCGAGGCGCTCGACGGATTGCCTGATAACTTCACCGTCACCGACCCTTCCATCCCTGGCCACCCCATCGTCTTCGCCAGCCTCGGATTCCTCAAGATGACGGGCTACTCTCGCGACGAGGTTGTCGGTAGGAGCGGTTCCATGTTCCAGGGGCCAGGGACCTCCAGAAGGTCGGTGATGGAGATTCGGGAGGCCGTTAGGGAGGAGCGGAGCTGCCAGGTCAGCTTGTTGAATTACCGCAAGGGTGGGACGCCGTTTTGGATGCTGTTCCATTTGAGTCCTGTTTTTGGAAGGGATGGTGGCGGGGTGGTTCATTTTGTGGCGGTTCAGGTGCCTTTGGATGGGAGACGGCGGCAGCGTTCCGGAGGGTGCCGGAGGGGAGGTGGTGGCAGTGGCGGCGGCGGCGGTGGTGGCGGTGGGGTGCAGCAGGTGTCTGTGTTGGGGTGTTGTAGGAAGGAGGTTTGCTCGGATAATGTGTTGGAGCTGGGTCGTGTGTCTTCCACGGATAACGGGGGTTTGGAGCATGATGCTAGAGAATTGGAGAGTGATGAGCCATGCGAGGCAAGTGATGAAGAAAAGAGAAGCGCAATGATTGCCATGGACAACATCTTTTCTGTGCTAACCCACTATAGTGAATCAGTAGGCAGATTGGTGTGTAGAAAGAGATGCGGCATACCTGACGTGGGTCGTCTCAGCACCTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCTGACATGCCTATTGTATATGCCAGCGATGCCTTCTTGAAATTGACAGGTTATGCAAGAGATGAAGTGTTGGGCCGCAACTGTAGATTTTTAAGTGGAATGGATACTGATAGCTCAACTTTATGTCTGATAAAGAAAAGCATTAAAACAGAGCAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAACCTTCTCCACATCTCACCAGTTCGTGATGCCTCTGGCAAGGTGGCATACTTCGTTGGAGTTCAAATAGAAGAGGACTTTGAAAACGGGGATAAGAAATGTTTGAGCCCTGACACGAGGCAGCTTAGAGTGGTTGGTATGGTCAAGGTTGGAGTGAGGAGTTTATCAATGAATGCTGGATCTTCCAATTCAAAGTCATAG 1257 0.5076 MESLEPRESSMISISTATEHSFDSRYSREAREALDGLPDNFTVTDPSIPGHPIVFASLGFLKMTGYSRDEVVGRSGSMFQGPGTSRRSVMEIREAVREERSCQVSLLNYRKGGTPFWMLFHLSPVFGRDGGGVVHFVAVQVPLDGRRRQRSGGCRRGGGGSGGGGGGGGGVQQVSVLGCCRKEVCSDNVLELGRVSSTDNGGLEHDARELESDEPCEASDEEKRSAMIAMDNIFSVLTHYSESVGRLVCRKRCGIPDVGRLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLSGMDTDSSTLCLIKKSIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEEDFENGDKKCLSPDTRQLRVVGMVKVGVRSLSMNAGSSNSKS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1583 418 SUPERFAMILY PYP-like sensor domain (PAS domain) 278 374 IPR035965 -
Dod02g1583 418 CDD PAS 37 140 IPR000014 -
Dod02g1583 418 MobiDBLite consensus disorder prediction 196 221 - -
Dod02g1583 418 Gene3D PAS domain 23 151 - -
Dod02g1583 418 CDD PAS 284 373 IPR000014 -
Dod02g1583 418 SMART pac_2 103 146 IPR001610 -
Dod02g1583 418 SMART pac_2 338 379 IPR001610 -
Dod02g1583 418 TIGRFAM sensory_box: PAS domain S-box protein 288 373 IPR000014 -
Dod02g1583 418 TIGRFAM sensory_box: PAS domain S-box protein 53 137 IPR000014 -
Dod02g1583 418 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 139 IPR035965 -
Dod02g1583 418 ProSiteProfiles PAS repeat profile. 288 310 IPR000014 -
Dod02g1583 418 MobiDBLite consensus disorder prediction 201 221 - -
Dod02g1583 418 SMART pas_2 263 336 IPR000014 -
Dod02g1583 418 SMART pas_2 28 97 IPR000014 -
Dod02g1583 418 Gene3D PAS domain 275 414 - -
Dod02g1583 418 Pfam PAS domain 275 374 IPR000014 -
Dod02g1583 418 Pfam PAS domain 50 140 IPR000014 -
Dod02g1583 418 PANTHER PROTEIN TWIN LOV 1 18 417 - -
Dod02g1583 418 MobiDBLite consensus disorder prediction 147 169 - -
Dod02g1583 418 PANTHER PROTEIN TWIN LOV 1 18 417 - -
Dod02g1583 418 ProSiteProfiles PAS repeat profile. 26 99 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1583 Dod-Chr2 19444972 19449959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1583 252 390 AGC Kinase Gene Family AT3G45780 45.390 6.10e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1583 - - adu:107489171 593.964