Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1579 ATGCCTGTGGCTATGGCGGGTGGCAAGTTTTATGGGGGTGCCAACATGACAGTTCTGCTCCAAAACGAGAGGCTCCCTTGTTCCTCTGAGGTTCTCGAGTCTCTCTGGGTTCACACCTCTGACCCTGCCTTCCAAGGTTCGAAATCCGTGGTTGATTTTGAGAATGGTAGAGGCAGCAGGATCACGGACAGGCCCTTCTTCCAAGGGCTTGAAAAGGAAGAGAACGTTGATGAGGACTACGACGCGTGCTTCCACCAAACGGGTAATAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTCGAGGTAGAGAACAAGCTTGAACCCGAAAGAAAAGTCCAGCTTGCAAAAGAGCTTGGCTTGCAGCCAAGGCAAGTGGCCATATGGTTCCAAAACCGGAGGGCAAGGTTCAAGACCAAGCAGCTTGAGAAAGAGTATGGCACATTGAAAGCTAGCTATGACACACTCAAAGGTGACTATGAAAATCTCCTTCAACAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTCAAGAACAAATTGATTCCAAGAGATAATAATAAAGAGATTAAAGGGAATTCACCAGATGACAAGTCATCCCAAGATGCTGCTGCTGCTGTTGTCAATTCACCCCACAAGGAGGAAGAGCCTATTGTGGATTTGATCTCAATTTCAAATGCAAATTCTGAAGATGGGTCCAAGTTGCCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCAAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACAACCATCACTCTTCCTCCTCATTCGTGGAGCCTGCCGATTCCTCCCCCGCTTTTGAGCCAGCAGACCATTCAGATTTCTCACAGGATGAAGAGGATAACCTCAGTGAAAACCTTTTGACCCTTCCATGCTTGTTACCAAAGATTGAAGAGTCATGCTATCATGATGAAGAACCACGTGCAGAGAAGTACACTTGTGGCTTTGGCTTCCCCGTTGAGGATCAAGCCTTTTGTTTCTGGCCTTACTGA 1062 0.4652 MPVAMAGGKFYGGANMTVLLQNERLPCSSEVLESLWVHTSDPAFQGSKSVVDFENGRGSRITDRPFFQGLEKEENVDEDYDACFHQTGNKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKEYGTLKASYDTLKGDYENLLQQNDKLKEEVNSLKNKLIPRDNNKEIKGNSPDDKSSQDAAAAVVNSPHKEEEPIVDLISISNANSEDGSKLPLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNNHHSSSSFVEPADSSPAFEPADHSDFSQDEEDNLSENLLTLPCLLPKIEESCYHDEEPRAEKYTCGFGFPVEDQAFCFWPY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1579 353 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Dod02g1579 353 MobiDBLite consensus disorder prediction 187 219 - -
Dod02g1579 353 MobiDBLite consensus disorder prediction 255 304 - -
Dod02g1579 353 Gene3D - 84 152 - -
Dod02g1579 353 Coils Coil 158 185 - -
Dod02g1579 353 MobiDBLite consensus disorder prediction 255 284 - -
Dod02g1579 353 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Dod02g1579 353 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Dod02g1579 353 SMART HOX_1 88 149 IPR001356 GO:0003677
Dod02g1579 353 MobiDBLite consensus disorder prediction 187 201 - -
Dod02g1579 353 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Dod02g1579 353 SUPERFAMILY Homeodomain-like 83 147 IPR009057 -
Dod02g1579 353 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Dod02g1579 353 CDD homeodomain 90 146 IPR001356 GO:0003677
Dod02g1579 353 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Dod02g1579 353 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 5 353 - -
Dod02g1579 353 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 353 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1579 Dod-Chr2 19317263 19319343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1579 26 186 Homeobox Transcription Factor Family AT3G01470 49.080 1.66e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod02g1579 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1579 - K09338 adu:107489132 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1579 02 19317263 19319343 Dod02g1579 02 19317263 19319343 ECH
Dod02g1606 02 19856351 19858645 Dod02g1579 02 19317263 19319343 PCT
Dod02g1579 02 19317263 19319343 Dod02g1579 02 19317263 19319343 PCT