Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1542 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCCCGAACATGCACCGACGGTTCCGCCGCCGGATGCGGCGGATCCCCGAGGGAGAACGGCATCATGCTGTTCGGCGTGCGAGTTACCGAAGGGAACTCCTTCAGGAAGAGCGCCAGCATGAACAACCTCTCCCAGTATGACCAGCAACCACCGCAGGATCCCAACGCCGCCGACGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGCCGCAGCCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAGGAGCACAGGTTGTTCCTGCTGGGTTTGCATAGGGTTGGAAAAGGAGACTGGAGAGGAATTTCTAGAAACTTCGTCAAGACTCGGACGCCGACTCAGGTGGCGAGTCACGCTCAGAAGTACTTCCTCCGCCGCCATAATCAGAATCGCCGCCGCCGGAGATCTAGCCTCTTTGACATCACCACTGATACGGTGATGGAATCATCGACGATAATGGAAGAAGAAGAAGCTAATCAAGAAACGGTTGCGCCACCCACACCGGCCGCATACCCGCCATCACACTACGGCGGCTTCCACGGCCCGGCTTTTCCGATTGCTTTAGCTCCGGTGGTGTTGCCGGTGGCGGCTGGCGGTGAGAGAGCGGCCAAGCCGATCAGGCCAACGCCGATTCTGCCAGTGCCACCATCTTCCAAGATGGCCAATTTGAACTTGAAAGAGAAAGCTTCTCCAACTCCTCTAGTTGAGCCTCTTCCATTGTCGCTGAAGCTTCCAACGCCGTCACTGCCGCCCACGGATCAGTCATCGGCAACTAGTAGCCACTCATCGCCATCATCATCATCAGCATCGGCGTCAGCTTTTCAGGCTATGTCGGCCGGAAATTTCAACGGTGGTGGGGATAGCATTATCAGTGTTGCTTGA 933 0.5798 MSRTCSQCGNNGHNSRTCTDGSAAGCGGSPRENGIMLFGVRVTEGNSFRKSASMNNLSQYDQQPPQDPNAADAGYASDDVVHASGRSRERKRGVPWTEEEHRLFLLGLHRVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEEANQETVAPPTPAAYPPSHYGGFHGPAFPIALAPVVLPVAAGGERAAKPIRPTPILPVPPSSKMANLNLKEKASPTPLVEPLPLSLKLPTPSLPPTDQSSATSSHSSPSSSSASASAFQAMSAGNFNGGGDSIISVA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1542 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 142 IPR006447 GO:0003677
Dod02g1542 310 MobiDBLite consensus disorder prediction 1 25 - -
Dod02g1542 310 PANTHER TRANSCRIPTION FACTOR KUA1 1 307 - -
Dod02g1542 310 CDD SANT 95 140 IPR001005 -
Dod02g1542 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Dod02g1542 310 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 307 - -
Dod02g1542 310 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Dod02g1542 310 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Dod02g1542 310 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
Dod02g1542 310 SUPERFAMILY Homeodomain-like 90 143 IPR009057 -
Dod02g1542 310 Gene3D - 94 145 - -
Dod02g1542 310 MobiDBLite consensus disorder prediction 247 290 - -
Dod02g1542 310 MobiDBLite consensus disorder prediction 264 290 - -
Dod02g1542 310 MobiDBLite consensus disorder prediction 1 22 - -
Dod02g1542 310 SMART sant 92 142 IPR001005 -
Dod02g1542 310 ProSiteProfiles SANT domain profile. 91 144 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1542 Dod-Chr2 18697998 18700203 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod02g1542 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1542 - - gmx:780554 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1542 02 18697998 18700203 Dod02g1542 02 18697998 18700203 ECH
Dod02g1542 02 18697998 18700203 Dod02g1542 02 18697998 18700203 PCT