Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1537 ATGAAGAGGTCTAGGGATGATGGTTTCGGGCCTCCTCAACTGAAACGGTCTATGATATCACGAGGAGAAGGGTCGCAACCCCAGATGATGAATGGAGGGGGTGCCACCCAGAAGCTAACTACAAATGATGCATTGGCATATCTCAAGGCGGTGAAGGATATATTTCAGGACAAGAAGGAAAAGTATGATGACTTTTTGGAAGTCATGAAAGACTTCAAGGCTCAAAGAATTGATACTGCAGGTGTCATAGCAAGGGTTAAGGAACTGTTCAAAGGGCATAGAGAACTAATACTGGGATTCAACACCTTCTTACCAAAGGGTTATGAAATCACACTTCCTCTGGACGATGATCAACCTCCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATTAAGAATCGGTTTCAAGGCGATGATCGTGTCTACAAGTCATTTCTGGACATATTAAATATGTACAGAAAGGAAAGCAAGAATATCACCGAGGTCTACCAGGAGGTTTCTGCACTTTTCCACGACCATCCTGATCTTCTGGATGAGTTTACTCATTTTCTTCCGGACACTACCGTAGCAGCCTCTACTCATTATGCTTCTGCTAGAAATTCTATGCTTCGCGATAGGAGCTCTGCAATGCCAACAATGCGGCAAATGCATGTTGACAAGAGAGAAAGGACCATGGCTTCACATGGTGATCGTGACCTCAGTGTCGACCGTCCTGATCGCGATCATGACAGAGGTATGATGAGGGCAGAAAAGGAGCAGAGGAGACGTTTGGAGAAGGAAAAGGAACATAGAGAAGAAAGAGACAGGAGAGAACGGGAAAGGGATGATAGAGATTATGAGCATGATGGTGGTCGAGATAGGGAGCGGTTCTTACACAAACGGAAAGCTGATCGAAAGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATATTGGTACGCGCCCTATGTCATCCACTTGTGATGATAGAAATTCTCTGAAAAGTATGTATAGTCAGGAGCTTGCTTTCTGTGAAAAGGTCAAAGAGAAATTACGAAATCCTGATGACTATCAGGAATTTTTGAAGTGTCTACATATTTATAGCAGGGAAATAATTACCCGACATGAGTTGCAATCATTGGTGGGTGATTTACTGGGGAAATATCCAGATCTTATGGAGGGGTTTAATGAGTTTTTGGTACAATCTGAAAAGAATGGTAATATTCAAACTAGTTTCTCACTATCTATGAAGTTTCACTATCTAATATTTCTAATCAGGATTTGTAATGCAGATGGTGGATTCCTTGCTGGGGTCATGAACAAAAAGTCCTTATGGAATGAAGGGCAGAGATCAAAATCAGTGAAGGTTGAAGACAGGGACAGGGATCGAGATCGAGACCGTTTTAGGGATGATGGGATGAGAGAAAGGGATCGTGAATGCCGAGAAAGGGACAAATCTACTGCGACTATCAACAAGGATGTTTCAGGTTCTAAGATGTCTATATATCCCAGCAAGGATAAGTATTTGTCAAAACCTATAAATGAGCTTGACCTTTCCAACTGTGAGCAATGCACTCCAAGTTATCGTCTCCTGCCAAAAAATTACCCAATACCTGTGGCTAGCCAGAGAACAGACCTTGGTGCAGAAGTATTAAATGATCACTGGGTGTCTGTCACTTCCGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGCGACCACCAAGCGAGTAGAAGAGCTGTTAGAGAAGATCAATAATAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAGCGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTACGGAAGAATGCATCTCTAGCTTTGCCAGTGATATTAACTCGCTTAAAGCAGAAACAAGATGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCTCTTGATCACCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACTAAAGCCTTACTGGCAGAAATAAAAGAAATTAGTGAGAAGAAACGCAAAGAAGATGACGTTCTTCTTGCAATTGCAGCTGGAAATAGGCGTCCTATTCTTCCAAACTTGGAGTTTGAGTATGCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTCTCGGCCTCTGGGTGCTGAGGACACAGAAGATGTTGTCAAGGATAAGAATAATTCTGCTAAAAGTGGCAGTGCAAGTGTTGCTGAGAGTGATGGTAGTCCTGGTGCTGGTGCTACTGTGATGAATCCAAAGCAAACAAACACTTCTAGAAATGGGAATGAGTGTATGCCATTAGATCAATCAAATTCGAGCAGAGTGTGGCAATCAAATGGTGATAGTGTGGTTAAAGATGATAAATGTCTTGATTCAGACCGTACTGTGCGTAAAACTGAAACTTTGGGCAGTAATACACAGCTTGGTAAAATGAATATTAGTTCATTCACGCCTGATGAACTGTCTGGAGTCAATAAGCAAGACCACTCCAGTGACCCGTTAGTGAATGCTAATGTCTTGCCTGCATTAGGAGCAGAACAAAGTAATGGAAGAACAAACATAGATAATGCATCAGCACTCACTGTTACTCCGTCTATGCCTGGTAATGTTTGTGTCGAGGGAGGGCTTGATTTACATTCATCAGAGGGTGGTGATTCTACAAGACCAGGTACGTCCACAAATGGGGCTGTCACTGAAGGAACTGAAGTTCGTAGATACCAAGAAGAATCAGTTCGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCCAATGGAGACTTTGAGGAGGATAACTTTGCTGGTTATGGACATACTGCTTTGGGTGCAGTTCATAAAGGGAAAGATGGTGGTGTGAGTCGACAATACCAAACTAGACATGGAGAAGAAGTTTGCGGTGAGGAAGCTAGAGGAGAGAATGATGCTGATGCTGATGATGAAGGTGAGGAAAGTCCACACAGGTCATCTGAGGACAGTGAGAATGCTTCTGAAAATGTTGATGTGTCTGGAAGCGAGTCTGCTGACGGTGAGGAATCTCGAGAAGAGCATGAGGATGGGGAAAATGATAACAAGGCTGAAAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCCATGATGTTGAAGGGGATGGAACCTCATTGCCATTTTCAGAACGCTTTTTACTAACTGTAAAGCCTCTGGCAAAGCATGTTCCCCCAGCATTACACGAGAAAGAAAGAACTTCTCAAGTGTTCTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTACATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCAGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGCTCTACTGATCAATATGACAGGTTCATGAATGCCCTTTACAATTTGCTTGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCAATTATTGGAACTCAATCATATCTACTGTTCACTTTAGACAAGCTGATTTATAAGCTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAACAAGCTTCTCCAACTATATGCATATGAGAAATCAAGAAAACCTGGAAGATTTGTTGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGAAGAGAACATATACCGTATTGAATATTCACCTGGACCAAAGCAATTATCTATTCAACTGATGGACTATGGACATGACAAGCCTGAAGTAACTGCTGTGTCGATGGACCCTAATTTTTCAGGCTATCTGTACAATGACTTCCTCTCTGTTGTCCCTGACAAAAAGAAGTCAGGAATTTTCTTAAAGAGGAACAAACGTAGATATGCCTGTGGTGATGACTTTTCAGGTCAGGCTATGGAAGGACTACGAGTTATTAATGGTCTTGAGTGTAAAATAGCTTGCAGTTCATCCAAGGTGTCATATGTTTTAGATACCGAAGATTTTTTGTTTCGGATGAAAAAGAATAAGGCGAAGTCTTCAAACATTTGTTCAAGGAGAGTACAACGGTTCCGCAACATGTTTTCCATTACATGCTGA 4332 0.4118 MKRSRDDGFGPPQLKRSMISRGEGSQPQMMNGGGATQKLTTNDALAYLKAVKDIFQDKKEKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRELILGFNTFLPKGYEITLPLDDDQPPPKKPVEFEEAINFVNKIKNRFQGDDRVYKSFLDILNMYRKESKNITEVYQEVSALFHDHPDLLDEFTHFLPDTTVAASTHYASARNSMLRDRSSAMPTMRQMHVDKRERTMASHGDRDLSVDRPDRDHDRGMMRAEKEQRRRLEKEKEHREERDRRERERDDRDYEHDGGRDRERFLHKRKADRKAEDSGAEPLLDADENIGTRPMSSTCDDRNSLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLVQSEKNGNIQTSFSLSMKFHYLIFLIRICNADGGFLAGVMNKKSLWNEGQRSKSVKVEDRDRDRDRDRFRDDGMRERDRECRERDKSTATINKDVSGSKMSIYPSKDKYLSKPINELDLSNCEQCTPSYRLLPKNYPIPVASQRTDLGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKINNNIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYADPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLCVPSRPLGAEDTEDVVKDKNNSAKSGSASVAESDGSPGAGATVMNPKQTNTSRNGNECMPLDQSNSSRVWQSNGDSVVKDDKCLDSDRTVRKTETLGSNTQLGKMNISSFTPDELSGVNKQDHSSDPLVNANVLPALGAEQSNGRTNIDNASALTVTPSMPGNVCVEGGLDLHSSEGGDSTRPGTSTNGAVTEGTEVRRYQEESVRHFKSEREEGELSPNGDFEEDNFAGYGHTALGAVHKGKDGGVSRQYQTRHGEEVCGEEARGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEESREEHEDGENDNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLTVKPLAKHVPPALHEKERTSQVFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYDRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRKPGRFVDIVYHENARVLLHEENIYRIEYSPGPKQLSIQLMDYGHDKPEVTAVSMDPNFSGYLYNDFLSVVPDKKKSGIFLKRNKRRYACGDDFSGQAMEGLRVINGLECKIACSSSKVSYVLDTEDFLFRMKKNKAKSSNICSRRVQRFRNMFSITC* 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1537 1443 MobiDBLite consensus disorder prediction 1108 1130 - -
Dod02g1537 1443 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Dod02g1537 1443 MobiDBLite consensus disorder prediction 1043 1062 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 815 878 - -
Dod02g1537 1443 Pfam Sin3 family co-repressor 525 616 IPR013194 -
Dod02g1537 1443 Pfam Paired amphipathic helix repeat 358 402 IPR003822 GO:0006355
Dod02g1537 1443 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Dod02g1537 1443 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Dod02g1537 1443 ProSiteProfiles PAH domain profile. 336 405 IPR003822 GO:0006355
Dod02g1537 1443 SUPERFAMILY PAH2 domain 334 402 IPR036600 GO:0006355
Dod02g1537 1443 MobiDBLite consensus disorder prediction 453 492 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 1 36 - -
Dod02g1537 1443 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Dod02g1537 1443 Gene3D Paired amphipathic helix 334 406 IPR036600 GO:0006355
Dod02g1537 1443 Coils Coil 592 616 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 992 1013 - -
Dod02g1537 1443 SMART hdac_interact2seq4b 523 623 IPR013194 -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 19 36 - -
Dod02g1537 1443 PANTHER SIN3B-RELATED 493 1426 IPR039774 GO:0003714
Dod02g1537 1443 PANTHER SIN3B-RELATED 1 419 IPR039774 GO:0003714
Dod02g1537 1443 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 493 1426 - -
Dod02g1537 1443 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 419 - -
Dod02g1537 1443 Coils Coil 253 275 - -
Dod02g1537 1443 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Dod02g1537 1443 MobiDBLite consensus disorder prediction 454 492 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 838 870 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 974 990 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 1071 1085 - -
Dod02g1537 1443 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Dod02g1537 1443 MobiDBLite consensus disorder prediction 964 1136 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 221 312 - -
Dod02g1537 1443 MobiDBLite consensus disorder prediction 206 334 - -
Dod02g1537 1443 Pfam C-terminal domain of Sin3a protein 1169 1414 IPR031693 -
Dod02g1537 1443 Gene3D Paired amphipathic helix 122 194 IPR036600 GO:0006355
Dod02g1537 1443 SUPERFAMILY PAH2 domain 35 106 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1537 Dod-Chr2 18611562 18622501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1537 26 142 WRKY Transcription Factor Family AT4G12020 50.427 9.53e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod02g1537 Sin3a_C 3.8e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1537 K11644 - gmx:100811928 2197.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1537 02 18611562 18622501 Dod02g1537 02 18611562 18622501 ECH