Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1467 ATGATCCGAAAATCAAACGGGTCGGGTCGCCGGGTACTGACATTTCCGGCGGTTCATCCCTGCGAGGACGTTTCTCTCTCTACCCTAATCTCTTCTCTTCTAACACTCTCTCACTCCATTTCCAATTCCCAATGGAGATCCTTCCCTTGCAACAAGCGAAACGCGAGCAACGCCATTCGTTTGGTTCAGCTTCTCCAACCTTTCATCCACGAGATCCGAGACCACAAAGCGGTTCTTCCGGATTCAGCAACCCTTTCTTTCTCGGAGCTCCACTTGACCTTCCAGAAGCTTCTTTTCCTTCTGGAAGACGCTGCCCGTGAAGGTGCCCGGTTGTTCATGGTGATGGAGTCGGGTCGGATTGCCAACCAGTTCAGGGTTTTATCAAGATCCGTTGCCACTGCATTGGATGTTTTCCCTTTCGGTTCAGTTGAGGTGTCTGAGGAAGTGAGGGAACAAGTTGTGTTGTTGATGAGGCATGCGAGGAATTCGAGGTTTGAAGTTGAGCCTGATGATAAACAGGCAATGATGGGTGTTATGTCGGGTTTGACCAGGTTTGAGAACCGGATTGACCCGAATGAGGGTGATCTCAAGTGGGTTCTTGAATATATTGGGGTTAGAGGGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGATGGTGAAATTGGGTTTGAGTGCTTGAAAGAGGGGAATAGGATGGTGGGGTTTTTGAGTAGCTTGATGGGGTTCATGTGCTATTGTAGATGCTTGGTGATGGAAGCTTTTGATGGTGAGGGAAGTAATAGTAACCCCAAATCTGATGCTGGAAGAGAAGGAAGTATTGAGGGTGAGATGGTTTTGAATTGCCTTAACCCTGATGATGATTTTAGATGTCCAATCTCTCTTGAATTGATGACTGATCCAGTGACTATAGAGACAGGTCACACTTATGATCGTTCATCAATTCTCAAATGGTTCAGAAGTGGGAATGCAATATGTCCCAAGACTGGTAAAAGGCTTATCAGCACTGAATTGGTCTCAAACTTGGTGCTCAGAAGGTTGATTCAGCAGTATTGCTGTGTGAATGGCATTCCTGTTGCTGATTCGGGTCGCAAGAACCGTGACATCAAAAGGACGGTGAAGCCTGGAAGTTCGGCTGCAGAGGGAGCCATGAAAATGCTGGCTGGTCTTCTCTGTGGAAAGCTCGAGAATGGAACAATTGAAGACAAGAACCGAGCAGCTTCGGAGATGAGGCTTCTTTCCAAAACAAGCATTTTTAATAGGTCTTGTTTGGTCGAAGCTGATTCAGTCCCTCTTTTGTTGAATTTGTTGTCAACTAGGGACTCATCAGCACAAGAGAATGCTATTGCAGCCCTTCTGAACATCTCAAAATACCCCAACAGCAGATCCGTGATGGCTAAGAATTGGGGGTTGGAACTAATTGTTGGGGTTTTAAAGAAAGGGCTAAAGATTGAAGCTCGCCAACATGCCGCTGCAGTGTTGTTTTACCTTGCATCAGATGCTGAATATAGGAAACTGATAGGGGAGGAACCAGAAGCGATTCCATCATTGATCAAGCTAATCAAAGATGGCTCCGATCGAGCCAAAAAGAATGGCTTGGTTGCAATTTATGGCCTCATTATGAACCAACGTGAAAACCACATGAGGGTGCTTGCATCAGGGGGAATTCCTTTGCTTGTTGGCATATTAAAAGCATGTGAGAAAGAAGAACTGATCACAGATGCTTTGGCAATTCTTGCAACTCTTGCAGAGGAGAGTGATGGAACAATGTCAATTCTTCAATGTGGAGCCTTGCTTGTTGCTGTTGAAATTTTGAGTTCTTCAACTTCAAGGGCGGGGAAGGAGCATTGTGTGTCTCTATTGCTTTCTCTATCAATTAATGGAGGAGTGGATGTGGTTGCTCAATTAGTGAAGAGCCCCTCTCTTATGGGATCCTTATATTCACAACTCAGTGAAGGCACGTCTCGAGCAAGCAAGAGGGCCAGTGCCCTCATCAGGGTCCTCCATGACTTTTATGAAAGGAGGTCCTCTGGCTTCAAGACTTCAGCTATTTCACGAGAACAATTTGTTCACGTATGGTAA 2082 0.4577 MIRKSNGSGRRVLTFPAVHPCEDVSLSTLISSLLTLSHSISNSQWRSFPCNKRNASNAIRLVQLLQPFIHEIRDHKAVLPDSATLSFSELHLTFQKLLFLLEDAAREGARLFMVMESGRIANQFRVLSRSVATALDVFPFGSVEVSEEVREQVVLLMRHARNSRFEVEPDDKQAMMGVMSGLTRFENRIDPNEGDLKWVLEYIGVRGWSECNKEVKFLDGEIGFECLKEGNRMVGFLSSLMGFMCYCRCLVMEAFDGEGSNSNPKSDAGREGSIEGEMVLNCLNPDDDFRCPISLELMTDPVTIETGHTYDRSSILKWFRSGNAICPKTGKRLISTELVSNLVLRRLIQQYCCVNGIPVADSGRKNRDIKRTVKPGSSAAEGAMKMLAGLLCGKLENGTIEDKNRAASEMRLLSKTSIFNRSCLVEADSVPLLLNLLSTRDSSAQENAIAALLNISKYPNSRSVMAKNWGLELIVGVLKKGLKIEARQHAAAVLFYLASDAEYRKLIGEEPEAIPSLIKLIKDGSDRAKKNGLVAIYGLIMNQRENHMRVLASGGIPLLVGILKACEKEELITDALAILATLAEESDGTMSILQCGALLVAVEILSSSTSRAGKEHCVSLLLSLSINGGVDVVAQLVKSPSLMGSLYSQLSEGTSRASKRASALIRVLHDFYERRSSGFKTSAISREQFVHVW* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1467 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 357 IPR013083 -
Dod02g1467 693 SMART arm_5 543 584 IPR000225 GO:0005515
Dod02g1467 693 SMART arm_5 500 541 IPR000225 GO:0005515
Dod02g1467 693 SMART arm_5 458 499 IPR000225 GO:0005515
Dod02g1467 693 SMART arm_5 416 457 IPR000225 GO:0005515
Dod02g1467 693 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Dod02g1467 693 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Dod02g1467 693 PANTHER U BOX DOMAIN-CONTAINING 4 684 - -
Dod02g1467 693 SUPERFAMILY ARM repeat 385 668 IPR016024 -
Dod02g1467 693 Pfam Armadillo/beta-catenin-like repeat 420 456 IPR000225 GO:0005515
Dod02g1467 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 684 - -
Dod02g1467 693 Gene3D - 376 671 IPR011989 -
Dod02g1467 693 SUPERFAMILY RING/U-box 283 359 - -
Dod02g1467 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 597 IPR000225 GO:0005515
Dod02g1467 693 CDD RING-Ubox_PUB 289 331 IPR045210 -
Dod02g1467 693 Pfam U-box domain 287 354 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1467 Dod-Chr2 17488747 17491159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1467 1 693 U-box Gene Family AT1G60190 46.657 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1467 - - gmx:100795816 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1467 02 17488747 17491159 Dod02g1467 02 17488747 17491159 ECH