Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1441 ATGCATAGACGGAAGAGAGGAGGGACTGATAGTGCAAGTGATACTTCTGAAGCTCAGCTTAAGCTTACTGTTCTCCAACGTGCACAAGAGGTTCAAGCTAACCTATCTCCTGAATTCCCGAGCCTTCTTAGGTCCATGCTTCGTTCTCATGTTTCCGGAGGATTTTGGCTTCGTCTTCCCAAAACATTCTGTCAGTTGCATTTGCCTAAGGTTGATACTATTATTGTTTTGGAAGATGAATGTGGGGAGCTATACGAGACCAAATATCTTGCTGAAAAGGTGGCCTTAAGTGGTGGGTGGAGGGGATTTTCTATCGCTCACAACTTACTTGAGATGGATGTTCTAATATTCCACTTGGTTCAACCTTCCAAATTTAAGGTGTACATTATAAGATCTCAGGGGTCAGATGAAGTGGATGGTGCTGTTAACCTTCTTAGGTCAGCCAACGGCAGAAAAGAAAAGGATGAAGTGGGTGATGCACTTGACGCTACTCGAAATGATCCAGAGACCAGCGAGATGATATTAAGTGTTAACGTATCTCAACCAGATCGGCCTGAAAATACCCCTAAGAAAGATTTTAGCCTAGCTGATGGGATCAGATTTGCAGAATCTGTAATCAGTTTCGAAGAAGTGAAGGGCCTTGAGAATTTCAGCATTCATGTGAATGGTTTGGTTATTGATTCAGAGCTCTCCAAATACCTTCGGGCCAAGTATTACAAGCTCTGTTGCAGCCAGAGATCGTTTCTTCATGACCATCTCCTTGGGGGTCTTAACTGTAAACTGGTGGCTGGGATAATTGCTGAGACCATCAATGTAGCTGATGCCATTAAAGCCAGCAAGCTTACTACCACTGAAGATAGTTTTGTGACATGGGTCAGAACCTTGAAAGCCTTTGAGGCCATGGGCATGGAGGTCAGCTTCTTGCTCAATCGGCTAGACCAGCTCATGGCACTATCTCTGAAATCCAAGAGGTACAGAGAGGCAAGACTTGAGCGACAACATGCTGAAGAGGAATTGAAAATTCTGGAAGCAAAACTGGTGGAAGTAAAACAAGCTATAAATAGACTTGATGAAGAGATCGGCGTCCAACATGTGAACCCTGAGAGGCTGGAGACTATGTTCCATGAGCTGGCTAATGCTCCTTGGTGA 1149 0.4439 MHRRKRGGTDSASDTSEAQLKLTVLQRAQEVQANLSPEFPSLLRSMLRSHVSGGFWLRLPKTFCQLHLPKVDTIIVLEDECGELYETKYLAEKVALSGGWRGFSIAHNLLEMDVLIFHLVQPSKFKVYIIRSQGSDEVDGAVNLLRSANGRKEKDEVGDALDATRNDPETSEMILSVNVSQPDRPENTPKKDFSLADGIRFAESVISFEEVKGLENFSIHVNGLVIDSELSKYLRAKYYKLCCSQRSFLHDHLLGGLNCKLVAGIIAETINVADAIKASKLTTTEDSFVTWVRTLKAFEAMGMEVSFLLNRLDQLMALSLKSKRYREARLERQHAEEELKILEAKLVEVKQAINRLDEEIGVQHVNPERLETMFHELANAPW* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1441 382 CDD B3_DNA 40 131 IPR003340 GO:0003677
Dod02g1441 382 Gene3D - 22 134 IPR015300 -
Dod02g1441 382 ProSiteProfiles B3 DNA-binding domain profile. 42 133 IPR003340 GO:0003677
Dod02g1441 382 SUPERFAMILY DNA-binding pseudobarrel domain 35 132 IPR015300 -
Dod02g1441 382 Coils Coil 318 359 - -
Dod02g1441 382 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 20 314 IPR044837 -
Dod02g1441 382 Pfam B3 DNA binding domain 45 132 IPR003340 GO:0003677
Dod02g1441 382 SMART B3_2 42 133 IPR003340 GO:0003677
Dod02g1441 382 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 20 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1441 Dod-Chr2 17186631 17195109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1441 21 172 B3 DNA Binding Superfamily AT3G19184 43.791 6.67e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod02g1441 B3 1.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1441 - - gmx:100782165 488.034