Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1440 ATGTTTGATTGCGTCTCAGGGCTATGCAGTGCAGAAAATATACGTGGATGCATTCTCGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCGATTACATTACTGTATACTCTAATTTGTCAAGGCTTTGATGGGAAGCCAATGGTTAGAAAGGCTATCATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAACAAGTGGGTTGGAGAAAGAGTTCGTCTTCTTGCTCTTTGCGAAAGCACTAGAGAAGATGTTGTCTCTGGGATTGACAATTTTACTAGTCCCCGCGGCAGTTTACAGGTGCTCATTGTTTCTTATGAGACATTCCGGATGCATTCGTCGAAGTTTAGCTCTAGTGACTCTTGTGACCTTCTTATTTGTGATGAGGCTCACAGACTGAAAAATGACCAGACAATAACAAACCGGGCATTGGCTGCTCTCCCATGCAAACGTAGAATTTTATTGTCAGGAACTCCTTTGCAGAATGACTTGGAGGAATTCTTCGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCCAATTTTCGACGTTACTATGAGGCTCCAATTGTTTGTGGAAGAGAACCTAATGCTACTGCTGAAGAGAAGAAGCTAGGTTTTGAACGCTCTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCATTATTATCAAATCACTTGCCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCCAAGAATGTTAGACGTGCAATTCATGAAGAACAGAAGCAATCAAAGATCTTGGCCTACATAACAGCTCTCAAAAAGTTGTGCAATCATCCAAAGCTTATCTACGATACCATAAAAAGTGGGAGTCCAGGAACTTCAGGTTTTGAAGATTGCCTTCGATTCTTCCCTCCAGAAATGTTGTCTGGAAGGTCTGGCGTATGGACGGGAGGGCATGGAGCTTGGGTTGAGCTATCCGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCAGAGGACAAATGATCGCATTGTCCTCGTGTCAAACTACACTCAGACTCTCGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCACCTGAGGCTCGATGGTGCCACATCAATTAAAAAAAGGCAGAAATTGGTCAACATCTTTAATGACCCATCTAAGGACGAATTTGTTTTTCTCTTAAGTAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAACCCAGCAAATGATAAACAAGCTGCAGCGAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTATACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCGAAAGAAGGACTGCAAAAGGTCATTCAGCAGGAGCAAACAGATAGCCTTGTGGCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTCACTTTTCATGAGAACGTCAAGTCAGAGATTCATGAAAAGATGCGATGCACTCGGTGCCAAACATATGACGGACCTCAAAGCACTGACGACAAATGTGATGCCCAATCAATGATAGTTGATAGTGAATTTGATGAAGAAATCTCTGATATTGGTGGATTTGCAGAAATTGCAGGCTGCTTGGAGAAGTTAAAAGGATCAGAAAAGCAGGTAGGGACACCATTGGAAGAAGATTTAGGCAGTTGGGGTCATCATTTTTTCTCAACTTCTGTTCCGGATGCCATCCTTCAGGCTTCAGCTGGTGATGAGGTGACCTTCGTGTTCACAAACCAAGTTAACGGACAGCTGGTACCCATTGAGTCCACAATCAGTCCTAAGTCACAGCGAAAGGAACCAAATAAGTCAAAGCTGCATGTCAGACAAAAGCCCGATTACTCCACTGTAAATGGATTATTACCACAGAAAAGATCATGTCCTGCTAGTTTCATCAATGTTGATGATTCTGATTAA 2058 0.4218 MFDCVSGLCSAENIRGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEINKWVGERVRLLALCESTREDVVSGIDNFTSPRGSLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIANFRRYYEAPIVCGREPNATAEEKKLGFERSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVRRAIHEEQKQSKILAYITALKKLCNHPKLIYDTIKSGSPGTSGFEDCLRFFPPEMLSGRSGVWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGATSIKKRQKLVNIFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNFLSTEDLRDLFTFHENVKSEIHEKMRCTRCQTYDGPQSTDDKCDAQSMIVDSEFDEEISDIGGFAEIAGCLEKLKGSEKQVGTPLEEDLGSWGHHFFSTSVPDAILQASAGDEVTFVFTNQVNGQLVPIESTISPKSQRKEPNKSKLHVRQKPDYSTVNGLLPQKRSCPASFINVDDSD* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1440 685 CDD SF2_C_SNF 342 470 - -
Dod02g1440 685 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 509 IPR001650 -
Dod02g1440 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 231 IPR027417 -
Dod02g1440 685 Gene3D - 1 230 IPR038718 -
Dod02g1440 685 Pfam SNF2-related domain 10 299 IPR000330 GO:0005524|GO:0140658
Dod02g1440 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 536 IPR027417 -
Dod02g1440 685 CDD DEXHc_RAD54 1 231 - -
Dod02g1440 685 Gene3D - 231 539 IPR027417 -
Dod02g1440 685 Pfam Helicase conserved C-terminal domain 350 458 IPR001650 -
Dod02g1440 685 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 8 181 IPR014001 -
Dod02g1440 685 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 1 638 - -
Dod02g1440 685 PANTHER SNF2/RAD54 FAMILY MEMBER 1 638 - -
Dod02g1440 685 SMART helicmild6 375 459 IPR001650 -
Dod02g1440 685 SMART ultradead3 1 194 IPR014001 -
Dod02g1440 685 Gene3D - 253 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1440 Dod-Chr2 17176305 17183073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1440 339 517 RAD5 or RAD16-like Gene Family AT5G43530 36.111 5.66e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod02g1440 SNF2_N 1.6e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1440 K10875 - gmx:100781631 1197.96