Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod02g1412 | ATGGCTTTAGAGGCTCTGAATTGTGGCAGCAAAGGAGGAAGCACGCCGCTGGGGTACGAACAAGAAGAGGAAGAGGCATGGGGTAAAAGGAGGCGTAGTTCGAAACGCCCCCGCGTGGAGACGATGATGAAGGCATCCACCACAGAGGAAGAGTACCTGGCTCTCTGCCTCATCATGCTCGCCAACAGCAACACTCGTCATCATCAGCCTCATCAACCACCACCATCATCTAAGCTGCAATCTAGCTCTAGCCATGATGATCAGAGTCACAGGTGCAGCGTCTGCAACAAAGCCTTTCCGTCTTACCAAGCACTTGGGGGACACAAGGCCAGCCACCGCAAGTACGACAACCCCCCCGCTCCCCCTCCAGCCCCCGCCGCAGGAAATAGAAGGGCGGCGCTGCACGAGTGCTCCATCTGCCACAAGGCTTTCCCGACGGGCCAGGCCCTCGGCGGCCACAAGCGATGCCACTACGAAGGCGGCGCCGCCTCCTCCTCCTCCTCTTCCAGCCACCGTTCCTTTGACTTAAATCTTCCCCCACCCCTCCCCCTCCCCGAACAAGAGGTCGAAAGCCCCTTATCCAACAAGAAGCCAGCTCCTTTGTTTTTCCGCGTAGCTTCCTCACACTCCTACTGA | 636 | 0.5818 | MALEALNCGSKGGSTPLGYEQEEEEAWGKRRRSSKRPRVETMMKASTTEEEYLALCLIMLANSNTRHHQPHQPPPSSKLQSSSSHDDQSHRCSVCNKAFPSYQALGGHKASHRKYDNPPAPPPAPAAGNRRAALHECSICHKAFPTGQALGGHKRCHYEGGAASSSSSSSHRSFDLNLPPPLPLPEQEVESPLSNKKPAPLFFRVASSHSY* | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod02g1412 | 211 | MobiDBLite | consensus disorder prediction | 65 | 89 | - | - | |
| Dod02g1412 | 211 | MobiDBLite | consensus disorder prediction | 161 | 175 | - | - | |
| Dod02g1412 | 211 | Gene3D | Classic Zinc Finger | 62 | 160 | - | - | |
| Dod02g1412 | 211 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 92 | 112 | IPR013087 | - | |
| Dod02g1412 | 211 | PANTHER | ZINC FINGER PROTEIN ZAT10 | 1 | 202 | - | - | |
| Dod02g1412 | 211 | SMART | c2h2final6 | 135 | 157 | IPR013087 | - | |
| Dod02g1412 | 211 | SMART | c2h2final6 | 90 | 112 | IPR013087 | - | |
| Dod02g1412 | 211 | MobiDBLite | consensus disorder prediction | 106 | 129 | - | - | |
| Dod02g1412 | 211 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 90 | 117 | IPR013087 | - | |
| Dod02g1412 | 211 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 135 | 157 | IPR013087 | - | |
| Dod02g1412 | 211 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 137 | 157 | IPR013087 | - | |
| Dod02g1412 | 211 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 1 | 202 | IPR044653 | GO:0003700 | |
| Dod02g1412 | 211 | MobiDBLite | consensus disorder prediction | 158 | 199 | - | - | |
| Dod02g1412 | 211 | MobiDBLite | consensus disorder prediction | 65 | 91 | - | - | |
| Dod02g1412 | 211 | Pfam | C2H2-type zinc finger | 90 | 114 | - | - | |
| Dod02g1412 | 211 | Pfam | C2H2-type zinc finger | 135 | 158 | - | - | |
| Dod02g1412 | 211 | SUPERFAMILY | beta-beta-alpha zinc fingers | 89 | 157 | IPR036236 | - | |
| Dod02g1412 | 211 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod02g1412 | 1 | 201 | C2H2 Transcription Factor Family | AT3G19580 | 40.377 | 8.35e-44 | 146 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Dod02g1412 | zf-C2H2_6 | 5.6e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod02g1412 | - | - | twl:120008434 | 159.844 |