LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g1411	ATGGCATCTACGGCGTCGGGGCGAGAGCTGTCGAACCCTCCGTCGGACGGCATCTCCAACCTTCGCTTCTCCAACCACAGCGATCACCTCCTCGTCTCCTCTTGGGATAAGACGGCGCGCTTGTACGACGCCAGCGCCAATGTCCTCAGAGGAGAGTTCATGCACGGCGGACCCGTCCTTGACTGCTGCTTCCACGACGACTCTTCCGGATTCAGTGCCTCCGCCGACAACACCGTTAGGCGGCTTGTCTTCAGCTCCAGTAAGGAGGATATTTTGGGAAGGCATGATGCACCTGTTCGCTGTGTCGAGTATTCCTATGCTGCAGGGCAATTGATTACTGGTAGTTGGGACAAAACCCTAAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAAGAGCGCACTCTTGTTGGGACATATCCACAACCTGAGCGTGTTTACTCTTTATCTCTTGTTGGAAATCGGCTAGTTGTAGCAACAGCTGGAAGGCATGTTAATGTGTATGATTTGAGGAACATGTCTCAACCTGAGCAGCGAAGGGAATCTTCATTGAAATACCAAACCAGATGTGTGCGCTGTTACCCAAACGGGACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGCAATGGAATTCTTTGACCTCTCTGAGGCTAGCCAAGCAAAAAAATATGCTTTTAAGTGTCACAGAAAGTCTGAAGCTGGAAGGGATATTGTCTATCCTGTAAATGCCATGGCATTCCACCCCATATATGGTACATTTGCGACAGGAGGTTGTGATGGTTATGTTAACGTATGGGACGGAAACAACAAGAAGAGGCTGTACCAGTACTCAAAATATCCAACTAGCGTTGCTGCACTTTCATTTAGTAGAGATGGACGCCTCCTGGCTATTGCATCAAGCTACACATTTGAAGAGGGGCCTAAACCCCATGAACAAGATGCTATCTACGTTCGGAGTGTAAATGAGATAGAGGTCAAGCCAAAACCCAAAGTCTATGCCAATCCTCCAGCGTGA	1017	0.4926	MASTASGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTARLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADNTVRRLVFSSSKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAIASSYTFEEGPKPHEQDAIYVRSVNEIEVKPKPKVYANPPA*	339

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g1411	338	Gene3D	-	2	332	IPR015943	GO:0005515
	Dod02g1411	338	PANTHER	MITOTIC CHECKPOINT PROTEIN BUB3.2	5	333	-	-
	Dod02g1411	338	SMART	WD40_4	132	168	IPR001680	GO:0005515
	Dod02g1411	338	SMART	WD40_4	3	43	IPR001680	GO:0005515
	Dod02g1411	338	SMART	WD40_4	85	124	IPR001680	GO:0005515
	Dod02g1411	338	SMART	WD40_4	46	83	IPR001680	GO:0005515
	Dod02g1411	338	SMART	WD40_4	219	267	IPR001680	GO:0005515
	Dod02g1411	338	ProSiteProfiles	Trp-Asp (WD) repeats profile.	242	276	IPR001680	GO:0005515
	Dod02g1411	338	SUPERFAMILY	WD40 repeat-like	14	301	IPR036322	GO:0005515
	Dod02g1411	338	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	92	124	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g1411	Dod-Chr2	16939232	16943103	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g1411	92	300	U-box Gene Family	AT2G33340	25.352	2.40e-07	50.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g1411	K02180		-	jre:108979744	665.996

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