Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1385 ATGCCTTCGAGCTCGAAGAGAAGCAGCAAGGGTCGCCAAAAGATCCAAATGAAGAAGATGACGAACGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGCAGCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGCGGTGTCCAGGTGGCCCTGATCGTGTTCTCCCCCGGCGACAAGGTGTTCTCATTCGGGCACCCGAACGTGGAGACTGTCATCAACCGCTTCGTACGCGGGGACCCCACAGCCCCTCACCTCGGAACCCGCCTTCATTGA 282 0.5887 MPSSSKRSSKGRQKIQMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGVQVALIVFSPGDKVFSFGHPNVETVINRFVRGDPTAPHLGTRLH* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1385 93 CDD MADS_MEF2_like 13 78 IPR033896 GO:0000977|GO:0045944
Dod02g1385 93 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Dod02g1385 93 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Dod02g1385 93 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Dod02g1385 93 PANTHER MADS BOX PROTEIN 9 80 - -
Dod02g1385 93 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Dod02g1385 93 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Dod02g1385 93 MobiDBLite consensus disorder prediction 1 26 - -
Dod02g1385 93 Gene3D - 22 87 IPR036879 GO:0003677|GO:0046983
Dod02g1385 93 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Dod02g1385 93 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 80 - -
Dod02g1385 93 SUPERFAMILY SRF-like 11 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1385 Dod-Chr2 16679631 16680481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1385 7 87 Type I MADS-box Gene Family AT5G60440 76.543 2.93e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod02g1385 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1385 - - ath:AT5G60440 134.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1385 02 16679631 16680481 Dod02g1385 02 16679631 16680481 ECH
Dod02g1385 02 16679631 16680481 Dod06g0526 06 6369430 6370106 PCT