Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1384 ATGGTGAAGAGAAAGTCTAGCTCAGGGCGCCAAAAGATTCCAATTGAGAAAATACCCAAAAAAAGCCATTTACAAGTCACATTCTCCAAGCGTCGCTCAGGTCTTTTCAAGAAGGCTAGTGAACTTTGCACACTTTGTGGGGTAGAGATTGCGATCATTGTTTTCTCTCCGGCTGATAAGGCCTTTTCTTTTGGCCACCCAGAAGTTGAATCCATAATTGATCGATATTTGACTCAAAACTCTCCACTAGACAGCACTAGCAGTACTACTCACCAACTTGTTGAGGCTCATCGTAATGCTAATGTTCGTAATCTCAACATGCAACTTACTCAGATTCTTAATCAGTTGGAGATTGAGAAGAAGCGAGGAGAGGATCTAGACCAGGTGCGGAAGGCTAGGCAGAAGCAGTTCTGGTGGGAGATCCCCATTGATGAGCTTGGATTGCATGAGTTGCAACATTTAATGCTTTCATTGGAGGAGCTTAAGAAGCATGTTGCAAAATATGCTAGCAAGATTTTGATGGAGCAGACCACCACTATTGCTACACCCCCAGTTATTGGGGCAAATAATGATGGATTTGGCCGTTATGATGATGCCCGTTATGATGCCTTCGAAACCAAACCTGCCGAGATTTATGCGAATTCTTTCCCTGTTGCTAATGCCTCTACTCTGAGTTTTCGTTATGGATATCTTTGA 696 0.4325 MVKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRYLTQNSPLDSTSSTTHQLVEAHRNANVRNLNMQLTQILNQLEIEKKRGEDLDQVRKARQKQFWWEIPIDELGLHELQHLMLSLEELKKHVAKYASKILMEQTTTIATPPVIGANNDGFGRYDDARYDAFETKPAEIYANSFPVANASTLSFRYGYL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1384 231 PANTHER MADS BOX PROTEIN 7 182 - -
Dod02g1384 231 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Dod02g1384 231 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Dod02g1384 231 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Dod02g1384 231 Coils Coil 99 126 - -
Dod02g1384 231 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Dod02g1384 231 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Dod02g1384 231 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Dod02g1384 231 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 182 - -
Dod02g1384 231 Gene3D - 88 182 - -
Dod02g1384 231 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Dod02g1384 231 CDD MADS_MEF2_like 9 81 IPR033896 GO:0000977|GO:0045944
Dod02g1384 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1384 Dod-Chr2 16661002 16661953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1384 1 201 Type I MADS-box Gene Family AT5G60440 49.505 6.17e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod02g1384 SRF-TF 2.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1384 - - gmx:100793705 297.36