Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1356 ATGGCGGAGCTGCAGAATCAGGCAACCACCACCACCGCCAGAGAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGGCTCACAACACAAAAGCTCTGATCAGCGCCCTCAACCTCCTCTCCCGCAACCTCCCTCTCCCTCCTCACCTCCTCAACACCGTTTCTTCCATCTCTCGCTCCTCCTCCTCCGGCTACACAGGGAAGTCTAGTGAAGAAGATCTTTTGGCAGATCTCAATGATGCGCTGTTGAAGCAACGAACGAATTGTGCGTCGGGTTTCAAATTAAGCAAAGCTAGGGAAAGCCGTTATCAAAGCCTGATTCAGCATCGCCTGACTCAGCTTGAAGAATTGCCTTCAAACAGGGGAGAGGACCTACAGACAAGGTGCCTGCTTGAGCTTTACGGACTAAAGCTGGCGGAATTGCAGAGGAAGGTTCGGTTTGATGTCAGTTCTGAATACTGGCTCAATCTTATATGTGCATATCCTGACAGGCAGTTGTTTGATTGGGGCATGATGCGACTGCGTCGTCCGATGTATGGTGTCGGAGATCCATTTGCTATGGATGCCGATGATCAATTAAGAAAGAAACGGGATGCTGAGAGACTATCAAGATTAGAAGAGCAGGCAAAAAATCATATTGAGACCAGAAAAAGAAGATTTTTTGCTGAAATACTGAATGCTGTACGTGAGTGCCAGCTACAATTTCAAGCTTCTTTGAAGCGCAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGGGCCACACGGGCTGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTGACTATGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGGGCAGCTGTTCAACGCCAAAAGGACTCAAAACAATCAGATGGTATTGAACCCCTGGAAGATTCAGAAGCTGATTTACCAGAGTCAGATGCTTCGAGGAATGGAATTTCTAAAGAATCACCTCTTGAGGAAGATGTGGATTTGATAGATTCTGATCAAAATGGAGACTCTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCTATACATTCAATTCAAGAAAAGGTAACCGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATACCAACTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAATAATTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGAAAGACAATACAAACCATTTCATTGATAGCATATCTTGTGGAACATAAGGGTGTCACTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTTTTGCCAAACTGGATCAATGAATTCTCAACTTGGGCTCCTAGCATTTCAACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAAGAAGAATTGTTAGGGGAGGGGAAATTTAATGTTCTGATAACGCATTATGATCTTATCATGAGAGACAAAGCATTTCTTAAGAAAATCGATTGGAACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGGACCCTAGACTCTGGCTATCACATCCAACGTAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTTCCTAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGTTGTTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATTTTAAGAAGGAAAAAGGACGAGGTGGAAAAATATCTTCCTGGAAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACAGATGTAGGAAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGGGACTATGATATATACAATCGTAAGGAGGAGATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGATCGCTTGCTCCCAAAACTTTGTAGAGCTGGTCACAGAATCCTTCTATTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTATAAGTTTCTTAGACTTGATGGCTCAACAAAAACCGAGGAAAGAGGCTCTTTATTACGGAAGTTCAATGCCCCTGACTCTCCGTACTTCATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTGGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAAAAGGAAGTTAGGGTGTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTTATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAGGAGATTATGCGAAGAGGTACAAGCTCACTTGGGACAGATGTACCCAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGACGAAGAGAGGAGACAAAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAACTGCCAGATTGGGTATACGCTCCAATAAATAAGGATGATAAGGTCAAAGCTTTTGATAGTGGTAGTTTTACTGGGAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAGTGGATGAAGGCTGTGGAGAATGGACAGGACATATCTAGGCTTTCAGTCAAAGGGAAGAGAAGAGACCACCTCCCTGCTGACAACCGTGCACAAGCCATTTGTAACATAGGGGCAGAAGAAAGGTCATTAGAGCTAAGGAATGAAAGGATCCCCATGACAAATGAGAGATCAAGTGAAGATTATTTCATTGTGACCCCTGCCTCTAAGAGACTGAAGCCCGAGGAACCAAGTTCCCAGAAACATGGAAGTGAGGATGCCGGAGTAAGTGGTTTGAACGAGCACATGTTTTCCTGGAATACTCACAAAAAGAAGAGATCAAGCTGTATTGGCCAGGGTTCATTATCTGATACTAGAGGGCAGAATTCAAATGGAAGAGCAAACTGGAACTGA 3303 0.4314 MAELQNQATTTTAREQQQQQQQQQQQAHNTKALISALNLLSRNLPLPPHLLNTVSSISRSSSSGYTGKSSEEDLLADLNDALLKQRTNCASGFKLSKARESRYQSLIQHRLTQLEELPSNRGEDLQTRCLLELYGLKLAELQRKVRFDVSSEYWLNLICAYPDRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSRLEEQAKNHIETRKRRFFAEILNAVRECQLQFQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTMLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSEADLPESDASRNGISKESPLEEDVDLIDSDQNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLVEHKGVTGPHLIVAPKAVLPNWINEFSTWAPSISTILYDGRLDERKAMKEELLGEGKFNVLITHYDLIMRDKAFLKKIDWNYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYNRKEEIVRASGKFELLDRLLPKLCRAGHRILLFSQMTRLMDILEIYLRLHDYKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYAPINKDDKVKAFDSGSFTGKRKRKEVVYADTLSDLQWMKAVENGQDISRLSVKGKRRDHLPADNRAQAICNIGAEERSLELRNERIPMTNERSSEDYFIVTPASKRLKPEEPSSQKHGSEDAGVSGLNEHMFSWNTHKKKRSSCIGQGSLSDTRGQNSNGRANWN* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1356 1100 SMART helicmild6 735 819 IPR001650 -
Dod02g1356 1100 PANTHER SNF2/RAD54 HELICASE FAMILY 12 1043 - -
Dod02g1356 1100 Coils Coil 910 930 - -
Dod02g1356 1100 Coils Coil 1 21 - -
Dod02g1356 1100 Gene3D - 364 619 IPR038718 -
Dod02g1356 1100 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 709 876 IPR001650 -
Dod02g1356 1100 Pfam Snf2-ATP coupling, chromatin remodelling complex 913 973 IPR029295 GO:0042393
Dod02g1356 1100 CDD SF2_C_SNF 697 830 - -
Dod02g1356 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 620 IPR027417 -
Dod02g1356 1100 Coils Coil 195 215 - -
Dod02g1356 1100 SMART ultradead3 391 584 IPR014001 -
Dod02g1356 1100 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 407 573 IPR014001 -
Dod02g1356 1100 Pfam Helicase conserved C-terminal domain 706 819 IPR001650 -
Dod02g1356 1100 Gene3D - 626 926 IPR027417 -
Dod02g1356 1100 MobiDBLite consensus disorder prediction 1073 1100 - -
Dod02g1356 1100 PANTHER ATP-DEPENDENT HELICASE BRM 12 1043 - -
Dod02g1356 1100 Pfam SNF2-related domain 398 686 IPR000330 GO:0005524|GO:0140658
Dod02g1356 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 873 IPR027417 -
Dod02g1356 1100 MobiDBLite consensus disorder prediction 1 27 - -
Dod02g1356 1100 MobiDBLite consensus disorder prediction 1040 1100 - -
Dod02g1356 1100 SMART SnAC_2 912 973 IPR029295 GO:0042393
Dod02g1356 1100 MobiDBLite consensus disorder prediction 312 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1356 Dod-Chr2 16270420 16280878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1356 702 847 RAD5 or RAD16-like Gene Family AT5G43530 37.333 2.47e-20 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod02g1356 SNF2_N 3.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1356 - - gmx:100775993 1843.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1356 02 16270420 16280878 Dod02g1356 02 16270420 16280878 ECH