Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1332 ATGGATGAAAAGCTCCCAACGACAAATGTGAAAGAAGGAAAAATCAAGCGTGGTAGCGGCACAGAAAAACAGAAGCTCCGAGAACGAATAAGGGAGATGCTTCTGAATGCAGGTTGGACCATAGACTATCGGCCTCGAAGGAATAGAGACTATCTTGATGCAGTTTACATTAATCCCACAGGTACAGCTTATTGGTCCATCATTAAGGCCTATGATGCACTTCAAAAGCAATTGAATGTTGATGTTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCCTTTGCTCCAATCGCAGATGAGGTGCTCAGTCAATTGACAAGGAAAACTAGGAAGAAGATGGAGAAAGAATTGAAGAAGAAGAAGAATAAAAGATACGACAGTGAGAGTGATGGTGGAAAAGAGCCTTATGGTAGACGATCTGCCAGCAACAAGCTTGATATGGATATCGCAGATAGTGATAGCAATGAAGAGAAATTAAGCACCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGATTGAAAGTACCATTGTCAGTGCTAGCTCTAAAAGCCAGAGCGCTACACATCACTCAAACGATGGAGTAGAGAAATCACTATCTGGATGGGACCCTCATCATCAGCGTGGAAGGAAGAGTAGAAAGCAAGGAAGATGTACCTTATTAGTTCGTAGTTCTAACAAGGGATTAAATTCAGAATCTGATGGCTTTGTCCCATATACGGGCAAACGGACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTACAGTTAAGTCAAAAGGTTCAGTACCGTAGACGGAAGAGAGTACTGCTGGAGGGATGGATAACCAGAGATGGAATTCATTGCGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCTGGAAGCAAATTGCCACAGCCATATCAAAACATATATTTGGAGTCTGGGGTTTCTCTGCTACAATGCCAGATAGATGCATGGAATGCACAAGAGAATTCTGAGAAAATTGCTTTCCATGCTGTGGATATTGATGGTAAAGATCCAAATGATGATACTTGTGGTATATGTGCAGATGGAGGGGACTTAATTTGTTGTGATGGTTGTCCATCAACATTTCATCAAAGCTGCCTGGGTATTCGGATGCTTCCTGCTGGTGAATGGCATTGTCCGAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGAAACTTCCAAAAAAGATGACGCAACTATGAATACCCTACAGACTTGCAACTTATGTGAGAAAAAATATCATGACTCGTGCTCTAAGGAGAAAGATGCCCTTCCTGACTTCAATATGTTAGACCCTCCTTTTTGTGGGAAAGAATGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGGACCAAGCATGAACTAGATGCAGGCTTTTCCTGGTCTCTTATTCATAGAACTGATGAAGACTCAGAGGCAGCTGGTAGGGGAATGACCCAAAGGGTGGAATGCAATTCCAAGCTAGCTATTGCTCTGACTGTGATGGATGAATGCTTTTTACCGGTTGTTGATCGGAGAAGCGGGATAAATTTAATAAAAAGTGTTTTATATAATAGTGGGTCAAATTTCAGTCGGTTGAATTACAGTGGCTTTTACACTGCTATTTTGGAGCGAGGGGATGAAATCATTTCGGCAGCATCCATTAGGTTTCGTGGGGACTAA 1698 0.4199 MDEKLPTTNVKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPTGTAYWSIIKAYDALQKQLNVDVNEAKPKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKNKRYDSESDGGKEPYGRRSASNKLDMDIADSDSNEEKLSTFIKQGSKSMKNKMIESTIVSASSKSQSATHHSNDGVEKSLSGWDPHHQRGRKSRKQGRCTLLVRSSNKGLNSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRRRKRVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNAQENSEKIAFHAVDIDGKDPNDDTCGICADGGDLICCDGCPSTFHQSCLGIRMLPAGEWHCPNCTCKFCGIASETSKKDDATMNTLQTCNLCEKKYHDSCSKEKDALPDFNMLDPPFCGKECKELFEHLKKYLGTKHELDAGFSWSLIHRTDEDSEAAGRGMTQRVECNSKLAIALTVMDECFLPVVDRRSGINLIKSVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFRGD* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1332 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 435 IPR013083 -
Dod02g1332 565 SUPERFAMILY FYVE/PHD zinc finger 342 398 IPR011011 -
Dod02g1332 565 Pfam PHD-finger 353 395 IPR019787 -
Dod02g1332 565 SMART PHD_3 352 393 IPR001965 -
Dod02g1332 565 SMART PHD_3 394 451 IPR001965 -
Dod02g1332 565 ProSitePatterns Zinc finger PHD-type signature. 353 392 IPR019786 -
Dod02g1332 565 MobiDBLite consensus disorder prediction 119 152 - -
Dod02g1332 565 MobiDBLite consensus disorder prediction 180 219 - -
Dod02g1332 565 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 3 564 - -
Dod02g1332 565 MobiDBLite consensus disorder prediction 180 197 - -
Dod02g1332 565 Coils Coil 103 130 - -
Dod02g1332 565 Pfam Tify domain binding domain 275 325 IPR032308 -
Dod02g1332 565 ProSiteProfiles Zinc finger PHD-type profile. 350 395 IPR019787 -
Dod02g1332 565 MobiDBLite consensus disorder prediction 109 152 - -
Dod02g1332 565 MobiDBLite consensus disorder prediction 1 22 - -
Dod02g1332 565 CDD PHD2_CHD_II 353 392 - -
Dod02g1332 565 PANTHER PHD FINGER FAMILY PROTEIN 3 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1332 Dod-Chr2 15975631 15979995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1332 8 565 PHD Transcription Factor Family AT4G14920 60.036 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod02g1332 TDBD 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1332 - - ccaj:109804483 950.658