Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1309 ATGGACACACCAGAGAGGAACCAGATCAACCCTCCCCCTTGCATATTTGAGGATTCACCAGTATTCAATTTCATCAACAATTTATCTCCTATAAAGCCTCTTAAATCTGCTCACACTACTCAGACTTTCAACTCACTTAGCTTATCCCCTCCGTCTGTTTTCAAGTCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTACTCAAGAGGCATAACCCTCTGGGGACATCAAAGCCTAAGGTCTCATCTGAAGATGTAAATAGGATTTACTCAAGTGAACAGGCTCTTGCAGATTCAACTCATGCACATAATAACTCGAGTGAGTTACAGGAAAATGCTCATCAAGGAATTTCTGTAGGAGATGCTTCAATAATTGACCTATCTGGTGAGCACACAAAGTTCTCAGTTGAGCTACCACAAGCCTTAAAATATAACTTTGGTTGCCCTGTCTATGATCCCCCACTTTGTGGTGATGAGGCTAACTCTCTTTTGGTATTGCCTGGTGAGGCAGCATCCGAAGTTGCCTATGTTCCGGAAGGCTGTAAAACAAGTTCAGTCGAGGGGGAACTGCATCTTCAGGGAATATGTCAGATGGAGCCAAAGACTGAAGGCCAAGAATGTGATTGGGATAGTTTAATTCCTGATGCCACTGACCTGTTAATTTTTAATTCCCCAAATGAAGCAGAAACTTTTAAGGCTCTAATGCAGAAACCATTGGGATATTCTGTACGACTTAGCGATTACATATCTCTGTTACCACAATCTATGGTCAATGATGGTCGGGGAGCCGATTCACTTGCTCCTCTTTCTCACTCTGAGCCAATAGCAGCTACTGACACAGGCCATATACAGGACACTGCCAATGTTGCTTTGATGACTGAAAATACAAATGAGAAAGTGGATAATGAGTTTGTTTCTGTGATGCACCGTGGTACAAGGAGGCGATGTCTAGACTTTGAGATGGCCAGTGTGCGAAGGAAGAACTCAGATGATAATTCAAACACTGGTGCCAGTACATCACAGACTGATGAGAAGAGTGTTGCTAATGCAAAGCAACTACTTCCCGCAAAACGCAATAGCAACTCACAGAGATGCGTTTTGCCTGGAATTGGTTTACACTTGAATGCACTTGCAGCCTTAAAAGAAAACAAAGGCATAAAAAATGAAAAGTCGTCTTTTGGAAGGCAACTCCGGCTTCCTGGCTCCACTTCTTCATTGCAACTCTCTACAAGCAAAGAGAATCATCATCAGCAATTGTTATCTGTATCATCTGAGAGAGAACTGGATCCATCAGACAAGGGGGTACAGCATGCTGAGGATTGTTCTCAGGCATCAGGTCACATGGCTGGTGAAGATTTCAATCAGAATAGCCCCAAAAAGAAAAGGCGTAATAAGTTGGAGCCAGCTGGGGAAACTGAGGGCTGCAAGCGCTGTAATTGCAAGAAATCAAAATGTTTGAAGCTTTATTGCGAGTGCTTTGCTTCTGGTGTCTACTGCATAGAACCGTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAGGACACAGTTCTTCAAACTCGCAAGCAGATTGAGTCTCGAAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGATTCTGTACCTGAAATCGGGGATGACCCAAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTCGGTTGCTCTATAAGTTGTAGATGTGAAGGATGCAAGAACGCATTTGGTAGAAAAGATGGTTCTGCTCCTATAGGAATGGAAGCTGAGCCGGAAGAAGAGACAGAAGCATGTGAAAATGGTACGGAGGAAAAGGCTTCGCAGAAAATTGAAGTTCAGAATATGGAAGATCATCCAGACTGTGTTCCTGTCTCGACACCGTTACGTCTATCCAGGCCATTGCTTCCATTGCCTTTTTCATCTAAGGGAAAGCCACCAAGATCTTTTGTTGCAACCATCTCTGGTTCTGGATTGTATGCCAGCTGCCAGAAGCTTGGGAAACCAAATTCTCTTTGGTCTCAGCCTAAGCATGTTCTTCAAACTGCTGCAGATGATGCAATGCCGGATGTTCTTGGAGGCGATAGCTCTCCTATCGCTTACATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCCAACTGTGACGTGGGACCATCTCCTACTCGCAGAGGTGGCAGAAAGTTGATATTACAATCCATCCCTTCATTTCCTTCTCTCACCCATCATTAG 2301 0.4394 MDTPERNQINPPPCIFEDSPVFNFINNLSPIKPLKSAHTTQTFNSLSLSPPSVFKSPHVSCLKESRLLKRHNPLGTSKPKVSSEDVNRIYSSEQALADSTHAHNNSSELQENAHQGISVGDASIIDLSGEHTKFSVELPQALKYNFGCPVYDPPLCGDEANSLLVLPGEAASEVAYVPEGCKTSSVEGELHLQGICQMEPKTEGQECDWDSLIPDATDLLIFNSPNEAETFKALMQKPLGYSVRLSDYISLLPQSMVNDGRGADSLAPLSHSEPIAATDTGHIQDTANVALMTENTNEKVDNEFVSVMHRGTRRRCLDFEMASVRRKNSDDNSNTGASTSQTDEKSVANAKQLLPAKRNSNSQRCVLPGIGLHLNALAALKENKGIKNEKSSFGRQLRLPGSTSSLQLSTSKENHHQQLLSVSSERELDPSDKGVQHAEDCSQASGHMAGEDFNQNSPKKKRRNKLEPAGETEGCKRCNCKKSKCLKLYCECFASGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSAPIGMEAEPEEETEACENGTEEKASQKIEVQNMEDHPDCVPVSTPLRLSRPLLPLPFSSKGKPPRSFVATISGSGLYASCQKLGKPNSLWSQPKHVLQTAADDAMPDVLGGDSSPIAYIKTSSPNGKRISSPNCDVGPSPTRRGGRKLILQSIPSFPSLTHH* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1309 766 SMART CXC_2 473 514 IPR033467 -
Dod02g1309 766 SMART CXC_2 559 600 IPR033467 -
Dod02g1309 766 MobiDBLite consensus disorder prediction 454 475 - -
Dod02g1309 766 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 765 IPR044522 GO:0003700
Dod02g1309 766 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 765 - -
Dod02g1309 766 MobiDBLite consensus disorder prediction 419 436 - -
Dod02g1309 766 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 476 511 IPR005172 -
Dod02g1309 766 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 562 597 IPR005172 -
Dod02g1309 766 ProSiteProfiles CRC domain profile. 474 599 IPR005172 -
Dod02g1309 766 MobiDBLite consensus disorder prediction 395 418 - -
Dod02g1309 766 MobiDBLite consensus disorder prediction 328 347 - -
Dod02g1309 766 MobiDBLite consensus disorder prediction 325 347 - -
Dod02g1309 766 MobiDBLite consensus disorder prediction 725 741 - -
Dod02g1309 766 MobiDBLite consensus disorder prediction 725 750 - -
Dod02g1309 766 MobiDBLite consensus disorder prediction 389 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1309 Dod-Chr2 15833449 15838788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1309 16 764 CPP Transcription Factor Family AT4G14770 44.171 9.62e-153 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Dod02g1309 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1309 - - gmx:100804447 1111.67