Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1280 ATGTGGTCGACGGGATTCACAATCGCTGTGATGACAATTTGCGGAATATATGCGACACATTGGTCATTTGTGGTAATCTTTTGTTTGGTTGGCTTGCTGGCACTATGTGCAATAAACATGAGAATACTAGGAAGAACAGTGGCCGAGGATGAGATTGAAGGGCGCCACTATCCTGCGTTTGAAGAATCAATGCCTATTCACCGAAGGCAACGAATTGCGAGGCATGCCATGAGAAAATTGCCACCAGTTAAAAGCTTCACTAAGGAGGACAAAACAAGAGATGGACCCCGAAGTGATGCTCGTCATTGTTCTATTTGCACGGAAGAGTTCAAGATCGGGGAGCTGATTCAACCTTTTGGGTTGTGTAACCATGACTTCCATTACTTCTGCCTCAACTCTTGGTTGCATGCTGGAAAATCTACTTGTCCCCTCTGCCGAAAAGATTTATTAGCTACCTCTACCCGTACAAGAGGCACATAG 480 0.4521 MWSTGFTIAVMTICGIYATHWSFVVIFCLVGLLALCAINMRILGRTVAEDEIEGRHYPAFEESMPIHRRQRIARHAMRKLPPVKSFTKEDKTRDGPRSDARHCSICTEEFKIGELIQPFGLCNHDFHYFCLNSWLHAGKSTCPLCRKDLLATSTRTRGT* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1280 159 ProSiteProfiles Zinc finger RING-type profile. 103 146 IPR001841 -
Dod02g1280 159 PANTHER OS06G0666500 PROTEIN 25 149 - -
Dod02g1280 159 CDD RING-H2 103 146 - -
Dod02g1280 159 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 149 - -
Dod02g1280 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 151 IPR013083 -
Dod02g1280 159 Pfam Ring finger domain 102 146 IPR001841 -
Dod02g1280 159 SUPERFAMILY RING/U-box 102 151 - -
Dod02g1280 159 SMART ring_2 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1280 Dod-Chr2 15527939 15528418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1280 80 146 C3H Transcription Factor Family AT5G41440 42.029 2.05e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1280 - K19039 adu:107470824 114.39