Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1267 ATGATGGGGAGAACACCAAGCAGTGATGAAAGTGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGACAAAATATTGGTGGACTTCATTCAGAAACATGGCCATGGGAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTGAACAGGTGTGGAAAGAGTTGCAGGTTAAGGTGGACTAATTATCTGAGGCCTGATATCAAGAGAGGAAAATTCTCTGATGATGAAGAGCAACTCATCATCAACTTACATGCAGTTCTTGGGAATAAGTGGGCGGCTATAGCAACTCATTTGCCAGGGAGGACTGATAATGAAATCAAGAATTTCTGGAACACACATTTGAAGAAAAAGCTTCTGCAAATGGGGTTAGACCCAGTTACTCACCGTCCAAGAACAGATCACCTAAATCTTCTCAGCAATCTACAACAGATTCTGGCTGCTGCTAACATTGTCAGCGGTTTCACAAACCCTCATGACATCAATAATGCTCTAAGGCTACAATCTGATGCCACACAACTAGCCAAACTCAACTTGGTGCAAAACATACTTCAACTCATGGGTGCAAATCCTGCCTCAAACTTAGAGCAACTTAATCCTCTAATTGGATCACCATACTCAATGCCAGAGGGTCTGCTATGTGAAGTTTTAGGATTGAATCATTCTAACCTCCAAAACATTCAAAATGGTTCAGTTGGTTTTTCTTCTCATAATCATCAGCCCAATTTCCAAAACTTGGAAGCACCTCAAGCCAGTACGTATCAGAACTTGAATGGTAGCATGAATAGCACTTGCAGTGAGTCTCAAAAGTTTGATGAACAACTTGGTTCCTCCACAGATGCTACTCTCACACCATCAAGTTCACTTCCAACTCTGGTTTCAGCCTCACCTGAACGTTCATCACCAGCCAAGCAGGAAGAAAAGGTGGTAAACCCAAAGGAATACTCTAATAATAATAATCCTTCTTCCACCACCTTTGAAATGTGGGGAGATTTCATGGATGTGGAAGCAACCGATGCTTATTGGAAAGATTTCATAGACCAACATTCTAACCAGCCATGGTCCACTGTCCCATGA 1071 0.4286 MMGRTPSSDESGLKKGPWTPEEDKILVDFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDDEEQLIINLHAVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRTDHLNLLSNLQQILAAANIVSGFTNPHDINNALRLQSDATQLAKLNLVQNILQLMGANPASNLEQLNPLIGSPYSMPEGLLCEVLGLNHSNLQNIQNGSVGFSSHNHQPNFQNLEAPQASTYQNLNGSMNSTCSESQKFDEQLGSSTDATLTPSSSLPTLVSASPERSSPAKQEEKVVNPKEYSNNNNPSSTTFEMWGDFMDVEATDAYWKDFIDQHSNQPWSTVP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1267 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod02g1267 356 PANTHER MYB TRANSCRIPTION FACTOR 4 347 - -
Dod02g1267 356 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Dod02g1267 356 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dod02g1267 356 Gene3D - 70 117 - -
Dod02g1267 356 Gene3D - 14 67 - -
Dod02g1267 356 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dod02g1267 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 347 - -
Dod02g1267 356 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod02g1267 356 MobiDBLite consensus disorder prediction 257 323 - -
Dod02g1267 356 CDD SANT 70 113 IPR001005 -
Dod02g1267 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dod02g1267 356 SMART sant 14 64 IPR001005 -
Dod02g1267 356 SMART sant 67 115 IPR001005 -
Dod02g1267 356 MobiDBLite consensus disorder prediction 257 298 - -
Dod02g1267 356 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Dod02g1267 356 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1267 Dod-Chr2 15386673 15388863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1267 2 345 MYB Transcription Factor Family AT5G16770 48.324 4.73e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g1267 Myb_DNA-binding 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1267 K09422 - gmx:547488 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1267 02 15386673 15388863 Dod02g1267 02 15386673 15388863 ECH