Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1253 ATGGAAGCTCTGCGAGGGATTTCCGGCACATTACTCCCTCGCTCTAAACCCTATGCTTCTCCTCTTTCCCAACTTCTCTTCCTCCGAACATTCACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACCACAGAAGAGAAATTAGCCGAAGCCTTTTCCCAATTTGGCAGTGTCCTGAAAGCTGATGTAGTAATGAATAAAGCCAAGAATAGATCCAAGGGTTTTGGATATGTGACCTTTGCTAAGGAGGAACAAGCCCGCAAGGCACAGATGGCCATGAACAGAAAGATATTACATGGACGGGTTTTATATGTGGACATGGAACCGCCTAGGAGGCGAAACATATCTTCTTTAGATGAGGCAACTGATGGTTGA 378 0.4392 MEALRGISGTLLPRSKPYASPLSQLLFLRTFTSKIFVKGLAFSTTEEKLAEAFSQFGSVLKADVVMNKAKNRSKGFGYVTFAKEEQARKAQMAMNRKILHGRVLYVDMEPPRRRNISSLDEATDG* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1253 125 SMART rrm1_1 34 107 IPR000504 GO:0003723
Dod02g1253 125 PANTHER TRANSFORMER-2-RELATED 27 114 - -
Dod02g1253 125 PANTHER RNA RECOGNITION MOTIF 27 114 - -
Dod02g1253 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Dod02g1253 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 104 IPR000504 GO:0003723
Dod02g1253 125 SUPERFAMILY RNA-binding domain, RBD 33 115 IPR035979 GO:0003676
Dod02g1253 125 Gene3D - 29 123 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1253 Dod-Chr2 15217121 15218580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1253 32 124 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 1.37e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1253 K13195 - gmx:100527061 152.91