Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1244 ATGAGGCTGAAGACATATGCGAGTCTTAGTTTGATTGCAACTCTGGCTATTGCATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTCTATCTTTCAACTTCCAAGATCAGCTTAATTCTTCTTCTCAACATGGGTTTGGTCATTATGTGTATTCTATGGCAATTAACTAAAAAGATATTCCTGGGTTCCCTCCGAGAGGCAGAGGTAGAAAGGCTTAACGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCAATTACTATTTTTAGGCAGGATTTCTCCGTTACATTTCTTGCGATGGTCACAGCGCTGTTGTTAATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTCGAATACATTGAGACCACTCCTTCAGTGCCCATGTTGTCCCACATTCGAATTGTGTCTTTTATGGGTTTCCTTCTTCTTCTAGATAGCCTTTTCTTATACAGTTCTATGAAGCATCTGTTGCAAACATGGCAGCCATCAGTTTCAATATTCTTTGCTTTTGAGTACATGATACTGGCAACGACAACAGTGTCAATTTTTGTAAAATATCTTTTGTGTGTCAGTGACATGCTTATGGATGGACAATGGGAAAGGAAGCCAGTCTTCACATTTTACCTGGAACTTATTAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTCCTTGTAATTTTTGTAAACTATGGTGTTCCTTTGCACTTAATACGGGAGCTATACGAGACATTCAGGAACTTCAAAGTTCGTGTTGCAGATTACATACGATATCGTAAGATCACTTCAAATATGAATGACCGGTTTCCAGATGCAACTCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATATGTCGTGAAGAGATGACTACTGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCCCTTGTTGTTCCACCAGAAAATGGGGCAACTTCAGCTGCAGGGCAGCAAGGATCACAATCAGATGCTCATCGACAGGCAGCAGGGACAGGCACTGGAAGCTCAGCTCAAACTGAGGTTGGCAGTTGGGGGGTAACTGATAACTTGAGTCAGCATCAAGCTAGACTCCAAGCTGCTGCTGCTGCTGCTTCAATATATGAGAAATCTTATGTTTACCCCTCCCCTGCTTCTTTAGTATGCTCTCCTGGGCACACCCTTCATCCCCCTGTTCAAATATCCATGGGTGAATCTATCAATAGTGGGCTTAATGGAGAACAAGCTTCCACTGAACAAGCACAAAGGCAGTTTGTTATCCCTGGTGGACCATTTGCATCCTTTCCTCAAATGGGACACTTCCATTTTCTTCCTTCCCAAACACATGCAGCGCCTGTGAATTATGGAGTTGAGTTTGGAAATGATCCAAATATGTCAAACTCTCAGCTGGAAGCTCAAAGAAAACTTCTAGAATACCAGATTGAGATTCTACAAAATCAGCTCCAGCTTTTGCAGAGGATAAAGGTCGGCAAGAGCGTTGATGAGGGCACATCATCATCAGATAGCAGAGGCAAGCAAATCGCATCCCCGGCGTCCACATCTGGTCATGAGGTCCAAGATGAGGAAGCATAA 1653 0.4332 MRLKTYASLSLIATLAIAYHAFNSRGQFYPAMVYLSTSKISLILLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLLLDSLFLYSSMKHLLQTWQPSVSIFFAFEYMILATTTVSIFVKYLLCVSDMLMDGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATSAAGQQGSQSDAHRQAAGTGTGSSAQTEVGSWGVTDNLSQHQARLQAAAAAASIYEKSYVYPSPASLVCSPGHTLHPPVQISMGESINSGLNGEQASTEQAQRQFVIPGGPFASFPQMGHFHFLPSQTHAAPVNYGVEFGNDPNMSNSQLEAQRKLLEYQIEILQNQLQLLQRIKVGKSVDEGTSSSDSRGKQIASPASTSGHEVQDEEA* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1244 550 CDD RING-H2_synoviolin 288 329 - -
Dod02g1244 550 PANTHER - 1 429 - -
Dod02g1244 550 SMART ring_2 291 328 IPR001841 -
Dod02g1244 550 SUPERFAMILY RING/U-box 271 335 - -
Dod02g1244 550 Coils Coil 487 514 - -
Dod02g1244 550 PANTHER RING ZINC FINGER PROTEIN 1 429 - -
Dod02g1244 550 MobiDBLite consensus disorder prediction 518 550 - -
Dod02g1244 550 Pfam Ring finger domain 290 329 IPR001841 -
Dod02g1244 550 MobiDBLite consensus disorder prediction 518 543 - -
Dod02g1244 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Dod02g1244 550 MobiDBLite consensus disorder prediction 339 369 - -
Dod02g1244 550 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1244 Dod-Chr2 15134634 15140826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1244 1 538 C3H Transcription Factor Family AT3G16090 64.404 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1244 K10601 - gmx:100816441 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1244 02 15134634 15140826 Dod02g1244 02 15134634 15140826 ECH