Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1220 ATGCAAGAATGTAGCAACAACAATGACATGGCCCAACCATCGAATTACCGAGGAGTTCGGAAGCGAAAATGGGGCAAATGGGTGTCCGAAATCAGAGAGCCAGGGAAGAAAACAAGAATATGGTTAGGGAGCTATGAGCTACCCGAAATGGCGGCGGCAGCATACGATGTAGCCGCGTTGCACCTTAGAGGACGCTCCGCGAGGCTCAACTTTCCCGAATTGGCTGCGACACTGCCACGTCCAGAAAGTTCTAGGGCCGAGGATGTGCAAGCCGCGGCGCAACAAGCTGCATTGCGGTTCAAGAGTATGCCGATGGCGACATCATCCGATGAGGTAGGTGTCAATGGGACATCGTCAAATTTTGGATGTTCAAATAGCACTACTGGTGTTCCCGTTAGGGTGGGGTTGTCCCCAAGCCAAATTCAGGCCATCAATGAGTCCCCATTGGACTCGCCAAAGCTGTGGATGATGCAAATGGCTGAGGCATTCATGTCTGGGCTCGATGATATTGATGATGATGAGTCCATGATGGTTTGTTGTGGTAATGATGTTTTGGAGTTGAGTGGATGGGAAGAAATACAGCACGAGTCATTGTGGGACTCATAA 606 0.5033 MQECSNNNDMAQPSNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYELPEMAAAAYDVAALHLRGRSARLNFPELAATLPRPESSRAEDVQAAAQQAALRFKSMPMATSSDEVGVNGTSSNFGCSNSTTGVPVRVGLSPSQIQAINESPLDSPKLWMMQMAEAFMSGLDDIDDDESMMVCCGNDVLELSGWEEIQHESLWDS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1220 201 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Dod02g1220 201 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Dod02g1220 201 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Dod02g1220 201 PRINTS Ethylene responsive element binding protein signature 54 74 IPR001471 GO:0003700|GO:0006355
Dod02g1220 201 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Dod02g1220 201 CDD AP2 14 74 IPR001471 GO:0003700|GO:0006355
Dod02g1220 201 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Dod02g1220 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 171 - -
Dod02g1220 201 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Dod02g1220 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 6 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1220 Dod-Chr2 14923683 14924401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1220 5 200 AP2-EREBP Transcription Factor Family AT1G71450 49.020 5.36e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod02g1220 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1220 - - gmx:100788567 236.113