Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1195 ATGCAGGGTAACGCCGCCGATGGAGAAGCCTTGGATTTCGAGCCGGAGGACGACGACCTCATGGACGAGGACGCCGCCGCCGATGCCGACGCCTCTCCACGCGCCGCCCCCCCTCCCAAGCTCAAGTCCGCCATCACCGCCGGCGCCTCCTCCTCCCTCTCCGCCCCTAAGAAGACCAAGGGCCGCGGCTTCCGCCCCGACTCCGATCCCAACCGCAACACTCGCCTCCAAGCCTCCGATTTCGACTCCCTCGCCACCGAGGGTGGCCCTGGCCCTCAACGATCAATTGAAGGGTGGATTATTCTGGTGACGGGCGTGCACGAGGAAGCGCAGGAGGATGATTTGCAAAACGCGTTTGGTGAATACGGAGAGATTAAGAACCTGCACTTGAATCTCGACCGTCGCACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTGCTGAGGAAGCTCGTAATGCAATAGAAAATTTGAATGGATCTGAGCTTCTTACACAAACCATTTATGTTGACTGGGCTTTCAGCAGTGGACCTATTAATGAGTTAGTCAGAAGAAAGAATGCTCGGCCACCTCGTGAGCGGCGCTCAAGGAGTCCTCGGAGGAGATATTGA 618 0.5663 MQGNAADGEALDFEPEDDDLMDEDAAADADASPRAAPPPKLKSAITAGASSSLSAPKKTKGRGFRPDSDPNRNTRLQASDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINELVRRKNARPPRERRSRSPRRRY* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1195 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Dod02g1195 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Dod02g1195 205 MobiDBLite consensus disorder prediction 10 26 - -
Dod02g1195 205 Gene3D - 14 202 IPR012677 -
Dod02g1195 205 PRINTS RNA binding motif protein 8 family signature 53 65 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dod02g1195 205 PRINTS RNA binding motif protein 8 family signature 146 162 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dod02g1195 205 PRINTS RNA binding motif protein 8 family signature 164 176 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dod02g1195 205 PRINTS RNA binding motif protein 8 family signature 90 104 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dod02g1195 205 SMART rrm1_1 100 173 IPR000504 GO:0003723
Dod02g1195 205 CDD RRM_RBM8 93 180 IPR033744 GO:0003729
Dod02g1195 205 PANTHER RNA-BINDING PROTEIN Y14A-LIKE 2 205 - -
Dod02g1195 205 MobiDBLite consensus disorder prediction 1 92 - -
Dod02g1195 205 SUPERFAMILY RNA-binding domain, RBD 92 203 IPR035979 GO:0003676
Dod02g1195 205 PANTHER RNA-BINDING PROTEIN 8A 2 205 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1195 Dod-Chr2 14718342 14721263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1195 101 175 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.09e-08 52.4