Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1175 ATGGCCTTCTCGCCAATTTTGTTCTTAGTTTCTATACTACTCTTGCTTCCTCACTCAACAAGAAGCAGAACAACTCCAGCTTGCGAAACGAGATACTGCGGAAGCCCTGAACTCTCTATTGAGTTCCCATTCCAGTTACATGGAGATAGTGTTGAAAACAAAGGATGCGGGTACAAAGGGTTTGAGGTTTTGTGTACAGAAAAGAATAAGCCATTGATTACACTCACAAAAGCAGGAGAATTTGTTATCAAAAACATCTCTCTGGAGCAGCAACACGTTTGGATCAACGACCCTGATGAGTGCCTCGCTAAGCGATTTCTTAAAAATGAGCGAATAGACCTCTCAGGCTCACCCTTCAGATGGGATGACTCTCAGTTTTTTTCTAGTGTGACATTTTACAGTTGCAGCGAATCAGCAGGAAATTCACCAGTGGTTGATCCGCAACTAACTATTCCTTGCCTAGGGGATGGGGATGCTAATCATTCCGTCGTGGTCATAGTGGACGGAGATGACGAGGCTTTGTCGTTTTCATCATCATGCGAGAATATTGGGTCTGCCAATATTCCAGTTACAAATTTACCGGAAAAATCAAGCGATATCCGGAAGGAACTCATTTACTCTGATATCATGTTGACATGGTCTCAGCCTAGCTGTGATTGCAATGCGGACCCACGGTGTGGATTCTCATCGGATACGGACGTTACTTTTTACGACAGAGGTGGAAGTCCTCCAAGTACTTTTGGGGACAATGGCAAGTTAGTTGCTATAGCCTGGGGAATATCTGTATTCCTATTCGTGGGTTGGATGCTATTAGTTGTATCTAATGGAATAAAAGAGTCTCTACGGCAACACTGGACGAGAATCATGGAATCAAACACCGAGCGACAGCAACCACCTGATGTGGCGAATGTGAGGCTTGACAATAATGGAGCAATGATAGACATAGAACAATGTCCAAAGATCCAGCTAAGTGAAAGTGCGCAACTGCCAAAATCCATCGACAATGTTTGCTCTATATGTCTTAGCGAGTACGAGCCAAAAGAGACATTGAGGAGCATGCCCCAGTGCAAGCACTATTTTCATGCCCGTTGTATAGATGCTTGGCTCAAGATGAATGCTACCTGCCCCTTATGCAGAAAGTTTCCCCTGGGATCTGCTAATTTGGTCACCACTTTGCCTCGCTTTGCAACTTCCTAA 1197 0.4444 MAFSPILFLVSILLLLPHSTRSRTTPACETRYCGSPELSIEFPFQLHGDSVENKGCGYKGFEVLCTEKNKPLITLTKAGEFVIKNISLEQQHVWINDPDECLAKRFLKNERIDLSGSPFRWDDSQFFSSVTFYSCSESAGNSPVVDPQLTIPCLGDGDANHSVVVIVDGDDEALSFSSSCENIGSANIPVTNLPEKSSDIRKELIYSDIMLTWSQPSCDCNADPRCGFSSDTDVTFYDRGGSPPSTFGDNGKLVAIAWGISVFLFVGWMLLVVSNGIKESLRQHWTRIMESNTERQQPPDVANVRLDNNGAMIDIEQCPKIQLSESAQLPKSIDNVCSICLSEYEPKETLRSMPQCKHYFHARCIDAWLKMNATCPLCRKFPLGSANLVTTLPRFATS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1175 398 SUPERFAMILY RING/U-box 336 381 - -
Dod02g1175 398 Pfam Ring finger domain 336 379 IPR001841 -
Dod02g1175 398 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Dod02g1175 398 SMART ring_2 337 378 IPR001841 -
Dod02g1175 398 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Dod02g1175 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 382 IPR013083 -
Dod02g1175 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 382 - -
Dod02g1175 398 CDD RING-H2_PA-TM-RING 336 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1175 Dod-Chr2 14558753 14563018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1175 28 382 C3H Transcription Factor Family AT2G46495 30.874 1.59e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1175 - - adu:107488346 304.293