Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1173 ATGGCTGCTTTGCCGTATTGCTTTTTCTCCTTAGTAGTATTTCTCTTGACTGGGCACACAAGAGCAAACGCTCAGCCGAGTAATTGCGACACCACCACCTGCGAAAGCTCCTCGGTCCCTATTCTCTTCCCTTTTTGGTTGAACGAAGCCAACCAAAGCAATCGATGTAGGTACCCAGGTTTCGAGCTCATGTGTGACAACAAGAACCAACCTTTACTCACTTTTCCAGAATCCGGAGACTTCGTAGTGAAAACCATCTTCAATCAAGATCAGACGATTTGGATTAACGTGGACCCAGATGAGTGCCTCCCAAGGAGGATCATGCTTAACCGTGGATTCAGCCTCGCGGGTTCCCCTTTTCAATTGGGAAACGCTTTTACTCTTGCGAATTATTCTTTTTACAGCTGCCCCTACAACACAACAACATCCTCGCATACGGTCCCATCCATAGGATGCCTAAGCCATACGGGCAACAAAAACTATTCGGTGCTGGCTGTGCTGTCTAATCCTCCACATCCAACGCCGTGGACGAACTCGTGCCACTTGATTTCTTCAGCCTTGGTTCCAGTTCCAGGGATTGAACGTGATCTATATTGGACCAGTTATTTTTCCGACATACAGTTGCAATGGGACGAGCCTTATTGTGGGGCTTGTGAACAACGTGGTGGACGGTGTGGGTTCGTTGGGGATTCTAGTGATCAAGTTGATTGTTACAATCTTCCAGACCAAGGTCAAGGTCTTTCTAGGAAAGTTAAGTACGGTTTAACTGTAGGACTGGGAATACCTGGACTCATTGGTGTTATTGGGCTAGCATGCTTGTTCTATCGCTGGATGAGTCTGCATAATCACCGACAACAACAAATGACAGAATTTTCTACCATGAGCAATCCACACCCTCCTGTAGTAGTCATGGGCCTTGATGGGGCATCAATAGAGAGATATCCCAAAACCCAGCTTGGTGATAGTGGAAGATTGCCCAGGCCCAATGATACTACTTGCTCCATATGTCTTTGTGAGTATCAGCCCAAGGAGGTGTTGAGGACCATTGCAGAGTGCAGTCACTATTTTCATGTGGATTGCATTGATGGGTGGCTCAAGATGAATGCTTCCTGCCCGTTGTGTCGAAACTTGCCCTGGAGATCCTCTTCGAGTTCCTCTTCTTTGCCTTTTTCTCCAATTTCTTCATAA 1188 0.468 MAALPYCFFSLVVFLLTGHTRANAQPSNCDTTTCESSSVPILFPFWLNEANQSNRCRYPGFELMCDNKNQPLLTFPESGDFVVKTIFNQDQTIWINVDPDECLPRRIMLNRGFSLAGSPFQLGNAFTLANYSFYSCPYNTTTSSHTVPSIGCLSHTGNKNYSVLAVLSNPPHPTPWTNSCHLISSALVPVPGIERDLYWTSYFSDIQLQWDEPYCGACEQRGGRCGFVGDSSDQVDCYNLPDQGQGLSRKVKYGLTVGLGIPGLIGVIGLACLFYRWMSLHNHRQQQMTEFSTMSNPHPPVVVMGLDGASIERYPKTQLGDSGRLPRPNDTTCSICLCEYQPKEVLRTIAECSHYFHVDCIDGWLKMNASCPLCRNLPWRSSSSSSSLPFSPISS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1173 395 Pfam Wall-associated receptor kinase C-terminal 201 238 IPR032872 -
Dod02g1173 395 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 389 - -
Dod02g1173 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 378 IPR013083 -
Dod02g1173 395 Pfam Ring finger domain 332 375 IPR001841 -
Dod02g1173 395 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 11 389 - -
Dod02g1173 395 Pfam Wall-associated receptor kinase galacturonan-binding 29 96 IPR025287 GO:0030247
Dod02g1173 395 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Dod02g1173 395 CDD RING-H2_PA-TM-RING 332 375 - -
Dod02g1173 395 SMART ring_2 333 374 IPR001841 -
Dod02g1173 395 SUPERFAMILY RING/U-box 327 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1173 Dod-Chr2 14528512 14530748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1173 24 378 C3H Transcription Factor Family AT2G46495 36.188 3.17e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1173 - - lja:Lj4g3v3004070.1 423.705