Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1160 ATGGATAAGCGTCCCCAGAATAAGGCAAAGGTCTCCACAACCACAGGTTCAACCTCTCAAGATGCAGAAGTGAGCAGCAATGAGTGGGAATTCATAGAGATGAGCGAGCAAGAGGAAGATCTTATTCGCAGGATGTACGGCCTTGTTGGGGATAGGTGGGATTTGATAGCGGGTCGCATTCCTGGTCGTAAAGCAGAAGAAATAGAAAGGTTCTGGATCATGAGACACGGAGATGCTTTTTCTGTTAGAAGAAATGAACATAGAGCGATTAAAGCCAAAAGCACGTGA 288 0.4583 MDKRPQNKAKVSTTTGSTSQDAEVSSNEWEFIEMSEQEEDLIRRMYGLVGDRWDLIAGRIPGRKAEEIERFWIMRHGDAFSVRRNEHRAIKAKST* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1160 95 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 87 - -
Dod02g1160 95 Pfam Myb-like DNA-binding domain 34 73 IPR001005 -
Dod02g1160 95 Gene3D - 34 75 - -
Dod02g1160 95 CDD SANT 33 72 IPR001005 -
Dod02g1160 95 SUPERFAMILY Homeodomain-like 35 73 IPR009057 -
Dod02g1160 95 MobiDBLite consensus disorder prediction 1 27 - -
Dod02g1160 95 MobiDBLite consensus disorder prediction 8 26 - -
Dod02g1160 95 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 1 87 - -
Dod02g1160 95 SMART sant 30 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1160 Dod-Chr2 14395775 14397315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1160 34 72 MYB Transcription Factor Family AT5G52600 58.974 6.70e-12 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod02g1160 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1160 K09422 - twl:119981384 130.568