Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1148 ATGACTTCACCTCCAGCCAAGTACACTCACCACCACCTCAACCGCACCAAACTCCTGAGAAAAACAGAACCAGACCCACCGAAGCTTCACTACCCGCGAGTGGTTAGAATAACCGTCACAGACACCGACGCCACCGACTCCTCCAGCGATGAAGAAGAGTACCAAACCTTCCGCTCCCGTAACTCCTCCACGCGCCACCGACAAACAACATTCGTCAACGAGATTGTTATGGAGCCCTGCTCTTGTGAAAACGATGGTGTCGGTTCAAGGAAGAGAAGCAGGCCCAATAAGTCCATCACCACCGGCGGGAAGGTCGGAACTCCGGCGAGTCGCCTGCAGAAGAATGTTTCCTCCGGGAAGAAATTCCGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCTGAGATAAGAGACCCGTCGCGGGGCGTGAGGTTGTGGTTGGGAACCTACGACACAGCTGAGGAAGCTGCAATGGTGTACGACAACGCGGCAATTAAGCTGCGTGGACCCGACGCTCTCACCAATTTCGTGACGCCACCAGCAACAGCAACAACAAGAAAAACGACAGCGCTGGACAACAAAGCGGCGACGGTTTTAACAAACGGTTACAATTCCGGGGACGAGTCTCAAAACAACACCAACAACTTGTTTTCCCCTTCTTCGGTCCTTCAGTGCTGTTCGTTAATATCCGAGGAAGCTGAATCCGTAGTAACGGTTAAAGAGGAAGAATATTCGTGCTGCGTGTCGGAGAATAATTTCAGCTTGTGTGATGAGATCTCAGCAGATAATAAGGTCAAATCTGATGATGAGTCATTCTTCCCGATTCCGAGTAGTGATGTGTTATTTGATTTTCAAGGTTCGTTATTTGATAGCGTGCCGGAAAGCTTGTTCTTCGCCGATGATGACTGCCCTGGTGGTGCTTCTTTCCTCACTTCTTGTGAGGATTTGGATTTTGGTTTCAAAAGTTGGCACAGAGAAGATGTTTTCTTCCAAGATATTAGCGATCTTTTTGCTTCGGATCCGCTTGTTGCTCTTTGA 1041 0.5024 MTSPPAKYTHHHLNRTKLLRKTEPDPPKLHYPRVVRITVTDTDATDSSSDEEEYQTFRSRNSSTRHRQTTFVNEIVMEPCSCENDGVGSRKRSRPNKSITTGGKVGTPASRLQKNVSSGKKFRGVRQRPWGKWAAEIRDPSRGVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPATATTRKTTALDNKAATVLTNGYNSGDESQNNTNNLFSPSSVLQCCSLISEEAESVVTVKEEEYSCCVSENNFSLCDEISADNKVKSDDESFFPIPSSDVLFDFQGSLFDSVPESLFFADDDCPGGASFLTSCEDLDFGFKSWHREDVFFQDISDLFASDPLVAL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1148 346 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Dod02g1148 346 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Dod02g1148 346 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 5 343 - -
Dod02g1148 346 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 343 - -
Dod02g1148 346 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Dod02g1148 346 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Dod02g1148 346 CDD AP2 120 177 IPR001471 GO:0003700|GO:0006355
Dod02g1148 346 MobiDBLite consensus disorder prediction 93 117 - -
Dod02g1148 346 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Dod02g1148 346 MobiDBLite consensus disorder prediction 84 123 - -
Dod02g1148 346 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Dod02g1148 346 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1148 Dod-Chr2 14260140 14261848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1148 1 346 AP2-EREBP Transcription Factor Family AT4G23750 40.431 2.38e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod02g1148 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1148 - - gmx:100779905 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1148 02 14260140 14261848 Dod04g2790 04 51981236 51982721 PCT