Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1121 ATGGGGCATCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGATGTGGCAAGAGTTGTCGCCTGCGATGGATTAATTATCTGAGGCCCGATATTAGAAGAGGCAGGTTTACCCCTGAGGAGGAGAAGTTAATTATAAGCCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCATTTGCCCGGTAGAACAGACAACGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAAAAAATTCGGAAGCCTTCGGGGGTGCCTTCATCCACCACCGCCACCACTGCACAAAGTGTTGATCATCCTCATCAGTTCAATTATAATTCCAATCAAATAGATCCCTTCTCCAACCAAGATACTAATAATCTAACATCAAAGCCACCAGTTCAAGAAACCACCTTATTTTCTTCCACGTGCCCCCTATTTATGTTTGACACTAGCTTACTAGATGGGACAACAGCAACAGCAGCAGACACCAACGTGCGAGCAGAACTCTTCCAAGACAGTACTACTTTGGTGGGTTTGAGTTCTGACACGTGGAACTTGAGCCAGGCACTCCCTCCTCCTCATCCAGCAGCAACTTTTACAGCGGTCATGGATACGAATAACTATCTGCCACCATTGATAGAGAGCGTGGAAAACATGGTGCCTATTGCGGTGCAGTCTTGTAGTATGGGAGAGGAAGGAGATATATCACTGGAGTGTTTGCAGAGGCATGAGCTGAATGAGTGGGTGGATACACAGCAGCATTGTCCTAACTTTCTTTTCTGGGACAATGTTGAAGGACAACTTGGTGGGGAAGAACTAGTAGTACCCAATTCATCGCATATGGGAACAAGCACAGTACTCTCTCCTTTCCCTTCGTCTTTGTGA 978 0.4591 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSGVPSSTTATTAQSVDHPHQFNYNSNQIDPFSNQDTNNLTSKPPVQETTLFSSTCPLFMFDTSLLDGTTATAADTNVRAELFQDSTTLVGLSSDTWNLSQALPPPHPAATFTAVMDTNNYLPPLIESVENMVPIAVQSCSMGEEGDISLECLQRHELNEWVDTQQHCPNFLFWDNVEGQLGGEELVVPNSSHMGTSTVLSPFPSSL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1121 325 CDD SANT 69 112 IPR001005 -
Dod02g1121 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod02g1121 325 PANTHER MYB TRANSCRIPTION FACTOR 1 324 - -
Dod02g1121 325 Gene3D - 68 139 - -
Dod02g1121 325 CDD SANT 17 61 IPR001005 -
Dod02g1121 325 PANTHER MYB DOMAIN PROTEIN 55 1 324 - -
Dod02g1121 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod02g1121 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod02g1121 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod02g1121 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod02g1121 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod02g1121 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod02g1121 325 Gene3D - 6 66 - -
Dod02g1121 325 SMART sant 66 114 IPR001005 -
Dod02g1121 325 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1121 Dod-Chr2 13911461 13914023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1121 1 305 MYB Transcription Factor Family AT1G63910 50.552 3.29e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g1121 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1121 K09422 K02947 gmx:100803556 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1121 02 13911461 13914023 Dod04g2766 04 51604640 51607121 PCT