Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1113 ATGGCTCGACCGCTGTGTGAAGACAAATCGCGGGACATGGTTTCATCATCAACAGGGTTCTGCTATTCGGATGTGTCATCATCGGGTAACCCAACGATGCAAACCCATCTGGTGAGCCAGATCCAAGGCTTTGTGTCGGACCCTGAGATGTTCAACCTCACGACGGGCATGGAGATGATAGGGTTTTCCAAGAACCTTCATCATCATCATCAGCAGCAGAGTAGTAGTGACACCAACGCTCTCATGTGGAAAAGTTTCTTCAACAATAAGCACGGTCAAAACCCTGGTCCTTCCTCTTCCAAGACCATCAACGAGTCTTCTGCTACCTTCTACCAACACCATCACCATGAGTACAACAACAACAAACCCGATTTCACATCGGGAATTTCTGAAACGAGCAGCGAGAATAATCATCTAATCATTGGGGCTCATGAAGATCAGTCAGCGGCACCGTGGCAAGAGAACAGGCCTAATTTGCTTGTTGATGATTCTTCTTTGAGGTGTGTGTTCCCTTGTGAAGGAAATGAGAGGCCAAGTCAAGGCCTTTCACTCTCTCTCAGTTCATCCAATCCTTCAAGTATTGGGTTGCAATCTTTTGAGCTGAGGCAAACCAGCCATCATCAGCCACAGCCACAGGTTGATTTTGTTTCATCAAGTTCCAGAGAGGGGTTCTTTGGAAAATCAGCGAATGCTCAACACATGTTGCAAGATGGGTATTTGAGTGCTAAAGCTTCTTCAGGTCTTTATCAAGGACACTTCGTGCTCAAGAACTCGAAGTACTTGTTGCCTGCACAGGAACTTCTGAACGAGTTTTGTAGCCTAGGCATGAAGCAAAGTGATGTGGCAAAGCAGAAGTCTAATAACAAGAACAAGCAGTGGGAAGATCAGGATAACAACAATGGTAGCGGTTCGTCAAAGAAGCATTCTCTCACCTCTCTTGAATTCGTGGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCAATGCTGGAAGAGCTTGACAGAAGATACAAGCACTACCGTAATCAAATGAAGGTTGTGGTGTCATCATTTGAGGCAGTGGCAGGAAATGGTGCGGCTAGAGTGTACTCGGCTTTGGCTTTGAGAGCCATGTCGAAATATTTCAGGAATTTGAAGGATGCGATTATGGAGCAGATTCAGGCCACGAGGAAAGCCATGGGAGAGAAAGATCCAATTGCACCAGGCACAACAAGGGGTGAAACACCAAGGCTCAAGGTCATTGACCAAGCAATGAGACAGCAAAGGGCATTCCAGCAAATGAGCATGATGGAGACCCATCCATGGAGACCCCAACGCGGCCTTCCCGAGCGATCAGTCTCAGTTCTTCGGGCTTGGCTCTTTGAGCATTTTCTCCATCCGTACCCAAGCGACGTTGATAAACATATTTTAGCCCGCCAAACTGGCCTCTCAAGAAGCCAGGTCTCGAATTGGTTCATCAACGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAATTGAAGGAACAAGAAAACAGCATGGGCTCCCTCGGAGGTAGGCGGCACCGATATCGATCCCGAAGAAGATCATAA 1584 0.4735 MARPLCEDKSRDMVSSSTGFCYSDVSSSGNPTMQTHLVSQIQGFVSDPEMFNLTTGMEMIGFSKNLHHHHQQQSSSDTNALMWKSFFNNKHGQNPGPSSSKTINESSATFYQHHHHEYNNNKPDFTSGISETSSENNHLIIGAHEDQSAAPWQENRPNLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQTSHHQPQPQVDFVSSSSREGFFGKSANAQHMLQDGYLSAKASSGLYQGHFVLKNSKYLLPAQELLNEFCSLGMKQSDVAKQKSNNKNKQWEDQDNNNGSGSSKKHSLTSLEFVELQKRKTKLLSMLEELDRRYKHYRNQMKVVVSSFEAVAGNGAARVYSALALRAMSKYFRNLKDAIMEQIQATRKAMGEKDPIAPGTTRGETPRLKVIDQAMRQQRAFQQMSMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEELKEQENSMGSLGGRRHRYRSRRRS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1113 527 CDD homeodomain 434 495 IPR001356 GO:0003677
Dod02g1113 527 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 6 518 - -
Dod02g1113 527 SUPERFAMILY Homeodomain-like 435 500 IPR009057 -
Dod02g1113 527 ProSiteProfiles 'Homeobox' domain profile. 431 494 IPR001356 GO:0003677
Dod02g1113 527 Gene3D - 437 499 - -
Dod02g1113 527 Pfam Homeobox KN domain 451 490 IPR008422 GO:0003677|GO:0006355
Dod02g1113 527 MobiDBLite consensus disorder prediction 282 308 - -
Dod02g1113 527 Pfam Associated with HOX 254 382 IPR006563 -
Dod02g1113 527 MobiDBLite consensus disorder prediction 507 527 - -
Dod02g1113 527 MobiDBLite consensus disorder prediction 293 308 - -
Dod02g1113 527 SMART HOX_1 434 498 IPR001356 GO:0003677
Dod02g1113 527 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 518 - -
Dod02g1113 527 SMART prehox3 249 383 IPR006563 -
Dod02g1113 527 Coils Coil 315 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1113 Dod-Chr2 13846447 13849441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1113 158 508 Homeobox Transcription Factor Family AT5G41410 52.030 3.88e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dod02g1113 POX 8.4e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1113 - - tcc:18606572 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1113 02 13846447 13849441 Dod04g2760 04 51545731 51551343 PCT