Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1107 ATGGGTAGTTGCTGTTGCTGTTCTTCCAAAGACGCTGAATTGAGCGCTCCACCTCCATACTACTATTATCCAAGAGTATCAGAGGAGCATGTCCCATTATCATCTAACCATGGTGCTGTCTCTGCTTTTTCTGGGGGACTCTTAGTTGATACGAATCTAGACACTTCAATTCCTGATACATATAGACCGCCTCCTGCTCCTATTCCTTTCAATATTACATTAGGTGTCACTCCAACTCCACCTGCGGCCCGAGAAATTTGTGTTGACAGGACTAATGCATCTGTACATACTACGAATTCTAATTCACTTGAAGAAACAGTTGCTGGGGAAAATCATGCGGCCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGAGTTGAAAGTTCAGAGTGCTTTAGAACTTGATTCAGCAAAGGATTCTGAAATAGAACTACCAAAGATAGCAGAACGTATCATTTTAGTGGAAGAGGAGGATGCATGCCCTATTTGTTTAGATGGTGATATTGTCACAGCTTCTTCATTCAGCTTCTTTTGCTTTCAATTCACTAAGCTTTATAAGATGACACTTATCCTGCTTTGGTTGGAATTGTGTGTTATTGATGTATTTTCATATTTTCAACTAGCAGACTATGATGCAGAGAATCCAAAGCTCACCACAAAATGTGATCATTATTTCCACCTAGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTTTGTGTGATCAGGATATAGTTTTGAACCCTCTCATTGATTAA 765 0.4026 MGSCCCCSSKDAELSAPPPYYYYPRVSEEHVPLSSNHGAVSAFSGGLLVDTNLDTSIPDTYRPPPAPIPFNITLGVTPTPPAAREICVDRTNASVHTTNSNSLEETVAGENHAASAKLEELKESELKVQSALELDSAKDSEIELPKIAERIILVEEEDACPICLDGDIVTASSFSFFCFQFTKLYKMTLILLWLELCVIDVFSYFQLADYDAENPKLTTKCDHYFHLACILEWMERSETCPLCDQDIVLNPLID* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1107 254 SUPERFAMILY RING/U-box 153 249 - -
Dod02g1107 254 SMART ring_2 160 243 IPR001841 -
Dod02g1107 254 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 207 253 - -
Dod02g1107 254 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 195 - -
Dod02g1107 254 ProSiteProfiles Zinc finger RING-type profile. 196 244 IPR001841 -
Dod02g1107 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 250 IPR013083 -
Dod02g1107 254 Pfam RING-H2 zinc finger domain 214 243 IPR024766 GO:0008270
Dod02g1107 254 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 207 253 - -
Dod02g1107 254 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 2 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1107 Dod-Chr2 13738948 13742284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1107 1 254 C3H Transcription Factor Family AT5G41350 40.698 1.37e-58 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1107 - - gmx:100816369 305.834