Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1058 ATGGCCTCAATATCATCATCATCATCCAAGACCAAGAGGCACCCAGTGTATCATGGAATCAGGTGCCGAGGTGGGAAATGGGTGTGCGAAATCCGGGAGCCACGCAAGAATTCCCGCATATGGCTGGGCACGTTCCCCACACCGGAGATGGCGGCGGCCGCCCATGATGTGGCGGCGTTGGCTTTGAAAGGCGACAATGCTGTTCTGAACCTGCCTTACTCTGTTGGCAAGTACCAATTGCCTGTCACCAACTCCCCTGCTGATATCCGCAGGGCTGCCACTGCTGCAGCTGCTTTGATGAGGAACCCTCAAGAACTCACTGGCAATGTTGATGTTGCATCATCAATCAATGTAGGTCGGCCCCATGAAGCTAGTGATGACACTGCTGATAGCAGTGTTAATGGTACTAATAATGCCGCTTCATCATGGTATGAAAATGATTTCATAGATGAGGAAGCAATATTTGGCATGCCGAGTTTGCTGGTGGACATGGCTGGCGGAATGCTTCTGTCGCCGCCTAGAATGATGAGTCCGCCACCATCGGATAACTCGCCTGATGAGAAGTCAGGTGGAGAGAGTCTGTGGAGTTATCTTTGA 597 0.5159 MASISSSSSKTKRHPVYHGIRCRGGKWVCEIREPRKNSRIWLGTFPTPEMAAAAHDVAALALKGDNAVLNLPYSVGKYQLPVTNSPADIRRAATAAAALMRNPQELTGNVDVASSINVGRPHEASDDTADSSVNGTNNAASSWYENDFIDEEAIFGMPSLLVDMAGGMLLSPPRMMSPPPSDNSPDEKSGGESLWSYL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1058 198 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Dod02g1058 198 SMART rav1_2 16 78 IPR001471 GO:0003700|GO:0006355
Dod02g1058 198 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Dod02g1058 198 ProSiteProfiles AP2/ERF domain profile. 16 72 IPR001471 GO:0003700|GO:0006355
Dod02g1058 198 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Dod02g1058 198 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Dod02g1058 198 MobiDBLite consensus disorder prediction 171 198 - -
Dod02g1058 198 PANTHER ETHYLENE RESPONSE FACTOR 5 197 - -
Dod02g1058 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1058 Dod-Chr2 13223970 13225081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1058 13 197 AP2-EREBP Transcription Factor Family AT5G52020 49.189 3.49e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod02g1058 AP2 2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1058 - - gmx:100811020 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1058 02 13223970 13225081 Dod02g1058 02 13223970 13225081 ECH
Dod05g1476 05 39528765 39530352 Dod02g1058 02 13223970 13225081 PCT