Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1048 ATGCAAGAACCAAGCTTGGGGATGATGGGTGGTGGCTCCGGCGACCACCACCAGCGGCAGCTGAAGGCGGAGATAGCCACACACCCTCTGTACGAGCAGCTCCTGGCTGCACATGTGGCGTGCTTACGTGTTGCCACGCCGATCGACCAGCTTCCACTGATTGACGCACAGTTGGCACAGTCTCACCATCTTCTGCGCTCTTATGTCTCCCAACACACTCACTCTCTTTCCCCTCATGACCGTCAGGACCTTGACAACTTCCTGGCACAGTATTTGATAGTTCTGTGTACTTTCAAAGAGCAGCTTCAGCAGCATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGACATTGAAAATACCTTACAAGCTCTCACAGGAGTCAGTTTGGGAGAAGGAACTGGTGCGACAATGTCAGATGATGAAGATGATATGCAGATGGATTTCTCTTTAGATCAGTCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCCTCTACTTCCTACAGAGTCTGAGAGGTCACTGATGGAAAGGGTCCGTCAAGAGCTAAAGATTGAACTGAAGCAGGGTTTTAAGTCAAGGATTGAAGATGTTAGGGAGGAAATACTGAGGAAACGAAGAGCTGGGAAATTACCAGGTGACACAACTTCTGTGCTGAAGAACTGGTGGCAGCAACATGCAAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACCGGGTTGCAGCTGAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCCAATCGGTTACCTCTCTCAAGTCCAAGCGCAAAAGAGTGTAGTGAGTGGCCACTAA 867 0.5029 MQEPSLGMMGGGSGDHHQRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLAQSHHLLRSYVSQHTHSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDMQMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSPIGYLSQVQAQKSVVSGH* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1048 288 Pfam KNOX2 domain 77 128 IPR005541 GO:0003677|GO:0005634
Dod02g1048 288 CDD homeodomain 208 269 IPR001356 GO:0003677
Dod02g1048 288 ProSiteProfiles 'Homeobox' domain profile. 205 268 IPR001356 GO:0003677
Dod02g1048 288 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 3 271 - -
Dod02g1048 288 SMART KNOX2_2 74 129 IPR005541 GO:0003677|GO:0005634
Dod02g1048 288 ProSiteProfiles ELK domain profile. 185 205 IPR005539 GO:0003677
Dod02g1048 288 SMART HOX_1 207 272 IPR001356 GO:0003677
Dod02g1048 288 Pfam Homeobox KN domain 225 264 IPR008422 GO:0003677|GO:0006355
Dod02g1048 288 SUPERFAMILY Homeodomain-like 207 273 IPR009057 -
Dod02g1048 288 Gene3D - 204 272 - -
Dod02g1048 288 SMART KNOX1_2 19 63 IPR005540 GO:0003677|GO:0005634
Dod02g1048 288 Pfam KNOX1 domain 21 62 IPR005540 GO:0003677|GO:0005634
Dod02g1048 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1048 Dod-Chr2 13106165 13112525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1048 1 270 Homeobox Transcription Factor Family AT1G62990 80.071 1.84e-166 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod02g1048 KNOX2 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1048 - - gmx:100808872 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1048 02 13106165 13112525 Dod02g1048 02 13106165 13112525 ECH