Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1044 ATGCATATGGCCTCAACGCTTCAACCTCGTAGTAGCTTCTTGCTAATTGCTTTTACATGGATGTTCACATTCATGAGAGGGCCAACAGTAGCAGTGGGAATTCTATTTCGACCCAGTGGATGGGTTCTTGCACATGCCACCTTTTATGGAGGAGCATGTGGGTACGGGAATTTGTTTCAGAATGGTTATGGGACAGATACTGCGGCTTTGAGCTCAACGTTGTTCAACAACGGCTATGCTTGCGGGACTTGTTACCAGATAAAATGCTACCAATCGAGTGCATGCTATAAAAATGTGGCCTTCACCACCGTCACTGCCACCAACCTCTGCCCTCCTAATTGGTCCGAGCCCTCCGATGACGGCGGGTGGTGCAACCCACCACGAACGCATTTTGACATGTCCAAGCCTGCCTTCATGAAGATTGCTCAGTGGAAGGCTGGCATCGTCCCTGTTCTCTACCGCAGGGTGCCATGCCAGAGGAAGGGTGGGCTCCGATTCACTTTCCAAGGAAATGGGTACTGGCTATTGGTATATGTGATGAACGTGGGAGGTGGAGGAGACATTTCTAGCATGTGGGTGAAAGGAAGCAGAACAGGATGGATTAGCATGAGCCACAACTGGGGTGCTTCCTACCAGGCCTTCGCAACTCTCTCTGCCCAATCCCTCTCTTTCAGGGTCACTTCATACACCACCAAGGAGACTATTATTGCATGGAATGTTGCTCCTTCCAATTGGAACGTTGGACTAACTTATTCCACCAACGTCAACTTCCACTGA 777 0.4981 MHMASTLQPRSSFLLIAFTWMFTFMRGPTVAVGILFRPSGWVLAHATFYGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWSEPSDDGGWCNPPRTHFDMSKPAFMKIAQWKAGIVPVLYRRVPCQRKGGLRFTFQGNGYWLLVYVMNVGGGGDISSMWVKGSRTGWISMSHNWGASYQAFATLSAQSLSFRVTSYTTKETIIAWNVAPSNWNVGLTYSTNVNFH* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1044 258 PANTHER EXPANSIN 4 258 - -
Dod02g1044 258 Pfam Lytic transglycolase 67 153 IPR009009 -
Dod02g1044 258 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Dod02g1044 258 Gene3D - 33 159 IPR036908 -
Dod02g1044 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Dod02g1044 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Dod02g1044 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Dod02g1044 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Dod02g1044 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Dod02g1044 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Dod02g1044 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Dod02g1044 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Dod02g1044 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Dod02g1044 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Dod02g1044 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Dod02g1044 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Dod02g1044 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Dod02g1044 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Dod02g1044 258 Gene3D - 164 258 IPR036749 -
Dod02g1044 258 PANTHER EXPANSIN-A15 4 258 IPR002963 GO:0009664
Dod02g1044 258 SMART dpbb_1 67 153 IPR007112 -
Dod02g1044 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 163 IPR007112 -
Dod02g1044 258 SUPERFAMILY Barwin-like endoglucanases 40 181 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1044 Dod-Chr2 13068396 13070204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1044 32 258 Expansin Gene Family AT1G12560 69.068 3.89e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1044 - - gmx:100807807 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1044 02 13068396 13070204 Dod02g1044 02 13068396 13070204 ECH
Dod05g1461 05 39218484 39220636 Dod02g1044 02 13068396 13070204 PCT